Ecological Dynamics Department
We are scientists of the Department of Ecological Dynamics at the Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany.
Berlin
Pinned Repositories
Benhaiem_2018_CommsBio
"Slow recovery from a disease epidemic in the spotted hyena, a keystone social carnivore"
d6
R package to simplify workflows of D6 research projects. The package provides utilities to set up a standardized folder structure and version control, and Rmarkdown templates and rendering functionality for a reproducible workflow.
d6_teaching_collection
d6berlin
R package that provides spatial data and template maps for Berlin. The data sets include green spaces, water bodies, district borders, raleways and more. A template map of imperviousness across Berlin with carefully chosen and aesthetically pleasing default is included to serve as a base map to visualize spatial data.
EcoDynIZW.github.io
We are the Department of Ecological Dynamics of the Leibniz IZW! This repository stores the distill webpage of the department.
GEE-PICX
imageseg
R package for deep learning image segmentation
Marescot_2020_bioRxiv
"‘Keeping the kids at home’ can limit the persistence of contagious pathogens in social animals"
Sollmann_2024_PCJ
Data and code for "Mt or not Mt: Temporal variation in detection probability in spatial capture-recapture and occupancy models", Sollmann, R., Peer Community Journal (submitted)
Templates-Mapping
A collection of useful code snippets for plotting maps.
Ecological Dynamics Department's Repositories
EcoDynIZW/imageseg
R package for deep learning image segmentation
EcoDynIZW/d6
R package to simplify workflows of D6 research projects. The package provides utilities to set up a standardized folder structure and version control, and Rmarkdown templates and rendering functionality for a reproducible workflow.
EcoDynIZW/d6berlin
R package that provides spatial data and template maps for Berlin. The data sets include green spaces, water bodies, district borders, raleways and more. A template map of imperviousness across Berlin with carefully chosen and aesthetically pleasing default is included to serve as a base map to visualize spatial data.
EcoDynIZW/EcoDynIZW.github.io
We are the Department of Ecological Dynamics of the Leibniz IZW! This repository stores the distill webpage of the department.
EcoDynIZW/Benhaiem_2018_CommsBio
"Slow recovery from a disease epidemic in the spotted hyena, a keystone social carnivore"
EcoDynIZW/d6_teaching_collection
EcoDynIZW/d6atlas
R package that provides a fast and friendly way to plot data in the ATLAS experimental area in the Uckermark, Brandenburg.
EcoDynIZW/d6geodata
R package to maintain geodata of D6 research projects. The package provides functions to get, manage and plot geodata
EcoDynIZW/Danabalan_Planillo_2023_eDNA
Comparison of mosquito and fly derived DNA as a tool for sampling vertebrate biodiversity in suburban forests in Berlin, Germany
EcoDynIZW/Drenske_2023_Oryx
"On the road to self-sustainability: Reintroduced migratory European Northern Bald Ibises (Geronticus eremita) still need management interventions for population viability"
EcoDynIZW/GEE-PICX
EcoDynIZW/Kuerschner_2021_EcolEvol
"Movement can mediate temporal mismatches between resource availability and biological events in host–pathogen interactions"
EcoDynIZW/Louvrier_2021_JAnimEcol
"Spatiotemporal interactions of a novel mesocarnivore community in an urban environment before and during SARS-CoV-2 lockdown"
EcoDynIZW/Marescot_2020_bioRxiv
"‘Keeping the kids at home’ can limit the persistence of contagious pathogens in social animals"
EcoDynIZW/Nguyen_2021_CSP
"Getting the big picture: Landscape-scale occupancy patterns of two Annamite endemics among multiple protected areas"
EcoDynIZW/Planillo_2021_DivDist
"Arthropod abundance modulates bird community responses to urbanization"
EcoDynIZW/Sollmann_2024_PCJ
Data and code for "Mt or not Mt: Temporal variation in detection probability in spatial capture-recapture and occupancy models", Sollmann, R., Peer Community Journal (submitted)
EcoDynIZW/Calderon_2022_AnimCons
"Occupancy models reveal potential of conservation prioritization for Central American jaguars"
EcoDynIZW/Axtner_2019_GigaScience
"An efficient and robust laboratory workflow and tetrapod database for larger scale environmental DNA studies"
EcoDynIZW/Caro_2023_AnimConserv
Data and code for "Meta- and subpopulation estimation with disparate data: coconut crabs in the Western Indian Ocean.", Caro et al., Animal Conservation (2023)
EcoDynIZW/d6projdata
R package that is designed to extract the rawdata of a project, create meta data and save it in a standardised way to use it in future projects. Intended for internal use only.
EcoDynIZW/Marescot_Franz_Benhaiem_2021_JAnimEcol
"‘Keeping the kids at home’ can limit the persistence of contagious pathogens in social animals"
EcoDynIZW/Naciri_2023_BiolConserv
"Three decades of wildlife-vehicle collisions in a protected area: Main roads and long-distance commuting trips to migratory prey increase spotted hyena roadkills in the Serengeti"
EcoDynIZW/overlap
R package: estimation of overlap of activity patterns
EcoDynIZW/Planillo_2021_LandUrbPlan
"Citizen science data for urban planning: Comparing different sampling schemes for modelling urban bird distribution."
EcoDynIZW/Planillo_2023_DivDist
Scripts for running non-stationary habitat suitability of wolves in Germany
EcoDynIZW/Rocha_Sollmann_2023_AnimConserv
Data for "Habitat use patterns suggest that climate-driven vegetation changes will negatively impact mammal communities in the Amazon."
EcoDynIZW/Schmied_2024_WildlBiol
"Effect of human induced surface water scarcity on herbivore distribution during the dry season in Ruaha National Park, Tanzania"
EcoDynIZW/Scholz_2024_STOTEN
Analysis of Metabarcoding Fox
EcoDynIZW/Sollmann_2023_Ecosphere
Scripts for simulation evaluation of temporal scale model (Sollmann 2023, Ecosphere)