EcoJulia/Microbiome.jl

Issues

• Improve efficiency of commjoin for large matrices

  #144 opened 8 months ago by kescobo
  0

• Selecting samples by vector of strings preserves order of original profile

  #143 opened 8 months ago by kescobo
  0

• Adopt views framework from SpatialEcology

  #142 opened a year ago by kescobo
  3

• Printing an empty comm profile throws error

  #123 opened 3 years ago by kescobo
  0

• Add `by` option for `filter` to enable filtering on samples, matrix, etc.

  #134 opened 3 years ago by kescobo
  0

• Re-implement @view from `ComMatrix` in SpatialEcology

  #60 opened 3 years ago by kescobo
  1

• Use Diversity.jl for alpha and beta diversity

  #117 opened 3 years ago by kescobo
  0

• Replace current metadata structure with DataAPI

  #141 opened a year ago by kescobo
  0

• TagBot trigger issue

  #52 opened 4 years ago by JuliaTagBot
  18

• Faster methods for building metadata with subsets of fields

  #137 opened 2 years ago by kescobo
  0

• JuliaCon presentation

  #130 opened 2 years ago by kescobo
  4

• Add Downstream tests for MicrobiomeAnalysis.jl

  #136 opened 2 years ago by kescobo
  0

• mantel test

  #127 opened 3 years ago by EvoArt
  2

• Add Metabolite <: AbstractFeature

  #122 opened 3 years ago by kescobo
  0

• support for biom format?

  #113 opened 3 years ago by aguang
  3

• Update NEWS.md

  #116 opened 3 years ago by kescobo
  0

• Dependencies [minor issue]

  #110 opened 3 years ago by adRn-s
  4

• vignette for data import

  #112 opened 3 years ago by aguang
  1

• documentation for `Microbiome.hasrank` and `Microbiome.Taxon`

  #114 opened 3 years ago by aguang
  0

• Can't run sample types docs s2 example

  #111 opened 3 years ago by aguang
  5

• SparseArrays

  #108 opened 3 years ago by vanjakle
  1

• Dictionaries.jl in Microbiome.jl

  #107 opened 3 years ago by vanjakle
  1

• Ensure round-tripping with DataFrames

  #62 opened 3 years ago by kescobo
  2

• Documenter broken - version incompatibility

  #95 opened 3 years ago by kescobo
  0

• master vs. main

  #90 opened 3 years ago by anikaluo
  1

• `taxon` ref link

  #91 opened 3 years ago by anikaluo
  0

• broken ref link

  #92 opened 3 years ago by anikaluo
  0

• grammar typo

  #93 opened 3 years ago by anikaluo
  0

• Change add_metadata! for single samples to set! and insert!

  #75 opened 3 years ago by kescobo
  0

• Add docs for Dictionaries methods

  #76 opened 3 years ago by kescobo
  3

• Add function to partition gene function profile into stratified / unstratified

  #68 opened 3 years ago by kescobo
  0

• Add taxfilter/taxfilter! functions for community profiles

  #67 opened 3 years ago by kescobo
  0

• Add set! method for adding metadata to community profile

  #65 opened 3 years ago by kescobo
  0

• Bulk addition of metadata

  #63 opened 3 years ago by kescobo
  0

• Broken link to biojulia contribution guidelines

  #69 opened 3 years ago by EvoArt
  2

• Bulk extraction of metadata

  #64 opened 3 years ago by kescobo
  1

• Add prevalence and abundance filters to AbundanceTable

  #32 opened 3 years ago by kescobo
  4

• Register v0.6

  #39 opened 5 years ago by kescobo
  2

• Register 0.5.1

  #35 opened 5 years ago by kescobo
  5

• Add Calliez correction to PCoA function

  #4 opened 6 years ago by kescobo
  0

• Documentation code examples broken

  #28 opened 6 years ago by mschauer
  2

• Register v0.4.1

  #30 opened 6 years ago by kescobo
  20

• Transfer Tree plot for Hclust recipe to StatPlots

  #19 opened 6 years ago by piever
  6

• Switch to BrayCurtis in tests

  #3 opened 6 years ago by kescobo
  1

• Interop with ecology related packages

  #7 opened 7 years ago by kescobo
  6

• Error tagging new release

  #1 opened 7 years ago by attobot
  0