Eden-Kramer Lab

Tools for analysis of neural data

Pinned Repositories

dppm
Matlab pipeline for simulating dynamical networks and evaluating dynamic community tracking methods, including CPM, MMM and DPPM
Language:MATLAB13 0 01
GLM-CFC
A GLM based approach to measure CFC
Language:MATLAB16 2 07
loren_frank_data_processing
Python tools for reading in data from Loren Frank's lab
Language:Jupyter Notebook9 2 101
rate_adjustment_for_spike_coherence
An implementation of the spike-rate adjustment method from Aoi et al. (2015) for comparing spike-field and spike-spike coherences.
Language:Jupyter Notebook5 2 15
replay_classification
State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016
Language:Python7 3 226
replay_trajectory_classification
State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
Language:Jupyter Notebook48 3 3516
ripple_detection
Tools for identifying sharp wave ripple events using LFPs
Language:Python36 4 710
spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
Language:Python127 3 3845
spline-granger-causality
A procedure to reduce the parameters estimate in Granger-causal analysis through temporal smoothing.
Language:MATLAB5 2 06
SSPE-paper
Code repository to recreate the simulations and plots of the State Space model for Real Time Phase Estimation paper as well as code for the state space model in SSPE
Language:MATLAB4 0 01

Eden-Kramer Lab's Repositories

Eden-Kramer-Lab/spectral_connectivity
Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data
Language:Python127 3 3845
Eden-Kramer-Lab/replay_trajectory_classification
State space models for decoding hippocampal trajectories and determining their type using sorted or clusterless data
Language:Jupyter Notebook48 3 3516
Eden-Kramer-Lab/ripple_detection
Tools for identifying sharp wave ripple events using LFPs
Language:Python36 4 710
Eden-Kramer-Lab/GLM-CFC
A GLM based approach to measure CFC
Language:MATLAB16 2 07
Eden-Kramer-Lab/dppm
Matlab pipeline for simulating dynamical networks and evaluating dynamic community tracking methods, including CPM, MMM and DPPM
Language:MATLAB13 0 01
Eden-Kramer-Lab/loren_frank_data_processing
Python tools for reading in data from Loren Frank's lab
Language:Jupyter Notebook9 2 101
Eden-Kramer-Lab/replay_classification
State space models for categorization of replay content from multiunit spiking activity. Deng et al. 2016
Language:Python7 3 226
Eden-Kramer-Lab/Multi-Dimensional-Decoder
Efficient Decoding of Multi-dimensional Signals from Population Spiking Activity Using a Gaussian Mixture Particle Filter
Language:MATLAB5 4 02
Eden-Kramer-Lab/rate_adjustment_for_spike_coherence
An implementation of the spike-rate adjustment method from Aoi et al. (2015) for comparing spike-field and spike-spike coherences.
Language:Jupyter Notebook5 2 15
Eden-Kramer-Lab/replay_identification
A semi-latent state-space model that combines movement, LFP, and ensemble spiking information to identify periods of replay and decode its content in real time. Long Tao et al., unpublished.
Language:Python5 3 123
Eden-Kramer-Lab/spline-granger-causality
A procedure to reduce the parameters estimate in Granger-causal analysis through temporal smoothing.
Language:MATLAB5 2 06
Eden-Kramer-Lab/replay_trajectory_paper
Language:TeX4 3 02
Eden-Kramer-Lab/SSPE-paper
Code repository to recreate the simulations and plots of the State Space model for Real Time Phase Estimation paper as well as code for the state space model in SSPE
Language:MATLAB4 0 01
Eden-Kramer-Lab/COMPASS
COMPASS: an open-source, general-purpose software toolkit for computational psychiatry
Language:MATLAB3 3 04
Eden-Kramer-Lab/time_rescale
Tools for evaluating the goodness of fit of a point process model via the time rescaling theorem
Language:Jupyter Notebook3 3 34
Eden-Kramer-Lab/UncertaintyInPhase
Repository to run analyses described in paper: "Different methods to estimate the phase of neural rhythms agree, but only during times of low uncertainty "
Language:MATLAB3 0 01
Eden-Kramer-Lab/Common_Oscillator_Models
Code repository of implementing the Common Oscillator Model
Language:MATLAB2 1 02
Eden-Kramer-Lab/video_behavior_tracking
Python package to track position, velocity, head direction from video for Loren Frank datasets
Language:Python2 2 12
Eden-Kramer-Lab/regularized_glm
Tools for fitting a generalized linear model with a L2 or difference penalty
Language:Python1 2 31
Eden-Kramer-Lab/spindle_detector
Detect spindles using an HMM
Language:Python1 2 02
Eden-Kramer-Lab/glm_course
Language:MATLAB0 4 02
Eden-Kramer-Lab/GMM_PointProcess
Closed Form Solution for 2D Replay Decoder Using Gaussian Mixture Models
Language:Matlab0 4 01
Eden-Kramer-Lab/Apnea_dynamics_toolbox
The sleep apnea dynamics toolbox implemented in Matlab
Language:MATLAB1 01
Eden-Kramer-Lab/CNN_Spectrogram_Algorithm
A method to classify spectrograms from raw EEG data using a convolutional neural network
Language:Jupyter Notebook0 03
Eden-Kramer-Lab/Eden-Kramer-Lab
Website
2 0
Eden-Kramer-Lab/Seizure-Waves-Validation
Language:MATLAB2 01
Eden-Kramer-Lab/spectral_rhythm_detector
Language:Python3 01
Eden-Kramer-Lab/StateSpaceMarkedPointProcess
Language:MATLAB4 0
Eden-Kramer-Lab/sumojam
Language:Python4 0
Eden-Kramer-Lab/Switching_Oscillator_Networks
Language:MATLAB0 01