Edgeworth/memerna

Issues

• build errors

  #28 opened a year ago by turix2
  2

• `rnapy.run build --regenerate` sometimes raises exception

  #29 opened a year ago by turix2
  1

• Arg parse crash

  #26 opened 3 years ago by maxhwardg
  1

• Subopt hairpin loop regression

  #25 opened 3 years ago by maxhwardg
  2

• SuboptCfg is not respected

  #24 opened 3 years ago by maxhwardg
  3

• Sample from probability distribution

  #23 opened 3 years ago by maxhwardg
  0

• Ability to turn on/off CTDs on all algorithms

  #13 opened 3 years ago by maxhwardg
  1

• Suboptimal folding misses some structures / Lonely pairs aren't optional

  #5 opened 3 years ago by maxhwardg
  6

• Brute force folding API niggles

  #11 opened 3 years ago by maxhwardg
  3

• Ctx has no Efn method

  #22 opened 3 years ago by maxhwardg
  0

• Coaxial stacks are double counted

  #19 opened 3 years ago by maxhwardg
  1

• Sum of probabilities is > 1 for some short sequences

  #17 opened 3 years ago by maxhwardg
  2

• Partition function hits assert on small sequence

  #16 opened 3 years ago by maxhwardg
  3

• Strangely large q value returned in partition function

  #20 opened 3 years ago by Edgeworth
  0

• The partition program crashes and has inconsistent outputs

  #21 opened 3 years ago by maxhwardg
  3

• config.cpp does not load default algorithms

  #4 opened 3 years ago by maxhwardg
  3

• Energy Functions Mix Parameter Types

  #1 opened 3 years ago by maxhwardg
  0

• An RnaPackage can only be created from an ArgParse

  #2 opened 3 years ago by maxhwardg
  2

• Suboptimal tracebacks collapsing CTDs

  #8 opened 3 years ago by maxhwardg
  3

• Base pair probability table is not symmetrical

  #10 opened 3 years ago by maxhwardg
  1

• Computing the CTD partition function

  #12 opened 3 years ago by maxhwardg
  0

• Vienna RNA bridge

  #14 opened 3 years ago by maxhwardg
  0

• Computer has no copy assignment operator

  #15 opened 3 years ago by maxhwardg
  2

• Base paring and partition tables are 3D but the last dimension always 1

  #9 opened 3 years ago by maxhwardg
  1

• Secondary type

  #7 opened 3 years ago by maxhwardg
  2

• The flag "k" is used to specify mrna in the ArgParse class

  #3 opened 3 years ago by maxhwardg
  1

• Partition program segfaults

  #18 opened 3 years ago by maxhwardg
  1