EdinburghGenomics/clarity_scripts

Issues

• generate hamilton input make cst doesn't handle replicates

  #107 opened 5 years ago
  0

• Allow replicates in `populate_batch_id.py`

  #105 opened 5 years ago
  0

• Human Tissure Report Generation

  #103 opened 5 years ago
  0

• Automatics assessment of run element improvements

  #97 opened 6 years ago
  0

• Rename gender to sex

  #96 opened 6 years ago
  0

• find_available_container does not handle SGP rack 96 positions

  #94 opened 6 years ago
  0

• ResultFile artifacts should not have location

  #91 opened 6 years ago
  0

• Reorganise clarity scripts to improve visibility on the scripts

  #89 opened 6 years ago
  0

• Ensure that tubes cannot also be UPLs

  #88 opened 6 years ago
  0

• spectramax.py missing underscore

  #84 opened 6 years ago
  0

• Route samples after "Awaiting User Response" to Remove Step

  #70 opened 6 years ago
  0

• Offer optional load_config in StepEPP

  #67 opened 6 years ago
  0

• ConvertGenotype does not overwrite best run = 0

  #61 opened 7 years ago
  0

• mean coverage is not being display in sample review

  #60 opened 6 years ago
  0

• Review sample with no data

  #58 opened 7 years ago
  0

• Reduce __main__ boilerplate code

  #56 opened 6 years ago
  1

• LIMS Change Request CR823

  #53 opened 7 years ago
  0

• Matching species field is missing aggregated

  #51 opened 7 years ago
  0

• Port Project report generation to clarity script

  #45 opened 7 years ago
  1

• Generate list of submitted sample and related plates

  #43 opened 7 years ago
  1

• Add new rules to sample assessment in Run review

  #40 opened 7 years ago
  0

• User prepared library UDF handling

  #39 opened 7 years ago
  0

• Review convert_and_dispatch_genotypes.py with new input file

  #38 opened 7 years ago
  1

• Get sample review into a Lims step

  #32 opened 7 years ago
  0

• Generate the Sample manifest from a step

  #25 opened 8 years ago
  1

• Record and validate fluidX tube barcode

  #24 opened 8 years ago
  1

• sample assignment checking all samples of the project

  #23 opened 8 years ago
  0

• Add Check for poor quality genotype in convert_and_dispatch_genotypes.py

  #22 opened 7 years ago
  0

• Refactor

  #18 opened 8 years ago
  2

• Parse data to a submitted sample using UDF contents as a reference

  #17 opened 8 years ago
  2

• Assign derived sample to step

  #14 opened 8 years ago
  1

• Spectramax Input

  #13 opened 7 years ago
  3

• Spectramax Parsing Step 2

  #12 opened 8 years ago
  1

• QC Review - alert to LIMS Manager/ Facility Director

  #11 opened 7 years ago
  1

• Update the script for Genotyping parsing and dissimination

  #10 opened 8 years ago
  1

• Fragment Analyser Hamilton Input

  #9 opened 8 years ago
  0

• Fragment Analyser Parsing Multiple Result Files

  #8 opened 8 years ago
  0

• Fragment Analyser Input File

  #7 opened 8 years ago
  0

• Spectramax Parsing

  #6 opened 7 years ago
  3

• Script to queue plate to discard

  #2 opened 9 years ago
  3

• Script that can retrieve reagent lots from cluster generation and sequencing run steps

  #1 opened 9 years ago
  1