EisenRa
Microbial ecologist and data scientsit at the Centre for Evolutionary Hologenomics, University of Copenhagen.
Copenhagen, Denmark
Pinned Repositories
2023_Controls_MR
GitHub repository for the data storage and analysis for the Methodological Review titled: "A Methodological Review: The Prevalence of Controls in Phyllosphere Microbiome Research.".
EHI_bioinformatics
Bioinformatics pipeline to process EHI data
2020_SHNW_Faecal_16S
Repository for the 2020 paper: "Signatures of landscape and captivity in the gut microbiota of Southern Hairy-nosed Wombats (Lasiorhinus latifrons)" in Animal Microbiome
2022_Adelaide_Code_Club
A fortnightly datascience / R training group.
2022_Koala_Faeces_R
2023_HiFi_comparison_mice
2024_soil_dark_matter_reply
A reponse to the recent exchange between Osmund et al. and Piton et al.
DRAM_more_modules
Modification of DRAM to output all modules (and use modules numbers instead of names)
holo-omics.github.io
SingleM_microbial_fraction_paper
Repository containing code and data to reproduce the SingleM microbial fraction paper.
EisenRa's Repositories
EisenRa/2022_Adelaide_Code_Club
A fortnightly datascience / R training group.
EisenRa/2023_HiFi_comparison_mice
EisenRa/2022_Koala_Faeces_R
EisenRa/DRAM_more_modules
Modification of DRAM to output all modules (and use modules numbers instead of names)
EisenRa/SingleM_microbial_fraction_paper
Repository containing code and data to reproduce the SingleM microbial fraction paper.
EisenRa/2024_soil_dark_matter_reply
A reponse to the recent exchange between Osmund et al. and Piton et al.
EisenRa/holo-omics.github.io
EisenRa/2022_SingleM_simulated
EisenRa/2023_genome_function_2
EisenRa/2023_KHills_metagenome
EisenRa/2023_TidyTuesdays
My entries for the 2023 Tidy Tuesday challenge :-)
EisenRa/2024_rock_wallaby_seasonal_microbiome
EisenRa/2024_shnw_metagenomics
EisenRa/2024_table_contest
EisenRa/2024_wombat_seasonal_microbiome
EisenRa/2024_YFRW_faecal
Repository for code for..
EisenRa/DAMMA
EisenRa/eisenra
EisenRa/ena-upload-cli
Fixes to the XML templates for ERC000053 and ERC000013
EisenRa/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
EisenRa/Host_transcriptomics_pipeline
Pipeline for analysing host transcriptomics data
EisenRa/markdown_readme
Markdown - you can mark up titles, lists, tables, etc., in a much cleaner, readable and accurate way if you do it with HTML.
EisenRa/metaGEM
:gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
EisenRa/mjolnir_ucph
Documentation for the computational infrastructure Mjolnir at UCPH
EisenRa/pb-metagenomics-tools
pb-metagenomics-tools
EisenRa/personal-website
Code that'll help you kickstart a personal website that showcases your work as a software developer.
EisenRa/photography
EisenRa/reads-for-assembly
Simulate metagenomic short reads from one or more populations. Adjusted to simulate microbial abundances with floating coverage numbers (e.g. 0.5 coverage)
EisenRa/singlem
De-novo OTUs from shotgun metagenomes
EisenRa/the_raph_round-up