ElenaCabelloYeves

ElenaCabelloYeves's Stars

• adamhockenberry/bacphlip

  A python library for predicting phage lifestyle based on genome sequence

  Language:Roff357

• amillard/tax_myPHAGE

  Workflow to assign Taxonomy to a bacteriophage genome isolate

  Language:Python242

• niaid/virome-pipeline

  This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

  Language:Python7

• FelixKrueger/TrimGalore

  A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

  Language:Perl472151

• zhenchengfang/PPR-Meta

  A tool for identifying phages and plasmids from metagenomic fragments using deep learning

  Language:MATLAB429

• gbouras13/pharokka

  fast phage annotation program

  Language:Python14917

• s-andrews/FastQC

  A quality control analysis tool for high throughput sequencing data

  Language:Java45686

• biobakery/MetaPhlAn

  MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

  Language:Python30686

• OSCA-source/OSCA

  The package wrapping the book, for deployment via the Bioconductor build system.

  Language:Makefile8019

• bhattlab/phanta

  Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

  Language:Python619

• chrisquince/STRONG

  Strain Resolution ON Graphs

  Language:Python479

• ablab/orf-search

  ORF search on assembly graphs

  Language:Python63

• chrisquince/STRONG_Sim

  Synthetic data set generation code for STRONG

  Language:Python2

• apcamargo/genomad

  geNomad: Identification of mobile genetic elements

  Language:Python19619

• RyanCook94/inphared

  Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

  Language:Perl618

• ku-cbd/PhageBoost

  Rapid discovery of novel prophages using biological feature engineering and machine learning

  Language:Jupyter Notebook356

• moshi4/pyGenomeViz

  A genome visualization python package for comparative genomics

  Language:Python28823

• ambarishbiswas/CRISPRDetect_2.2

  CRISPRDetect: A flexible algorithm to define CRISPR arrays

  Language:Perl94

• chen318liang/Gut-Metagenome-Pipeline-Based-on-Nanopore-Sequencing

  Language:Shell8

• gtonkinhill/panaroo

  An updated pipeline for pangenome investigation

  Language:Python26933

• pipolinlab/ExplorePipolin

  A pipeline for identification and analysis of pipolins, novel bacterial mobile genetic elements

  Language:Python2

• asierzaragoza/flex2

  Language:Python31

• PATRIC3/mauve-viewer

  A Whole Genome Alignment Visualization Tool for the Web

  Language:JavaScript425

• pwilmart/fasta_utilities

  Utilities for downloading and managing protein FASTA files.

  Language:Python137

• weizhongli/cdhit

  Automatically exported from code.google.com/p/cdhit

  Language:Perl644129

• dimiboeckaerts/BacteriophageHostPrediction

  Code and database related to our manuscript "Predicting bacteriophage hosts based on receptor-binding proteins"

  Language:Jupyter Notebook114

• mjsull/Easyfig

  Development version of Easyfig

  Language:Python9124

• RezaRezaeiJavan/PhageMiner

  A user-supervised semi-automated bioinformatics tool for prophage identification in bacterial genomes

  Language:Python55

• bxlab/metaWRAP

  MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

  Language:Shell402190

• BinPro/CONCOCT

  Clustering cONtigs with COverage and ComposiTion

  Language:Python12548