Rqc is an optimized tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.
Install via Bioconductor, stable version
source("http://bioconductor.org/biocLite.R")
biocLite("Rqc")Install via GitHub, development vertion
install.packages("devtools")
library(devtools)
install_github("labbcb/Rqc")