EllieDuan

EllieDuan's Stars

• phageghost/python-genome-browser

  Tools for making plots of genomic datasets in a genome-browser-like format

  Language:Jupyter Notebook282

• krishnanlab/teaching

  Courses & workshops led by members of the Krishnan Lab.

  Language:Jupyter Notebook2319

• joshdick/onedark.vim

  A dark Vim/Neovim color scheme inspired by Atom's One Dark syntax theme.

  Language:Vim Script3.9k532

• RILAB/statements

  Successful Job Applications and Grants

  671125

• hbctraining/DGE_workshop

  Language:HTML365165

• pfurio/bed2gtf

  Script to convert a BED file into a GTF

  29

• RenneLab/CnR-flow

  CUT&RUN-Flow, A Nextflow pipeline for QC, tag trimming, normalization, and peak calling for data from CUT&RUN experiments.

  Language:Nextflow54

• macs3-project/MACS

  MACS -- Model-based Analysis of ChIP-Seq

  Language:Cython698268

• nf-core/chipseq

  ChIP-seq peak-calling, QC and differential analysis pipeline.

  Language:Nextflow186145

• FredHutch/SEACR

  SEACR: Sparse Enrichment Analysis for CUT&RUN

  Language:Shell9943

• friedue/course_RNA-seq2019

  3518

• Homebrew/legacy-homebrew

  💀 The former home of Homebrew/homebrew (deprecated)

  27k11.4k

• mforde84/ENCODE_TF_ChIP_pipeline

  minimal pipeline for SPP and MACS2 peak calling plus secondary IDR analysis

  Language:R93

• crazyhottommy/ChIP-seq-analysis

  ChIP-seq analysis notes from Ming Tang

  Language:Python737294

• stevekm/Bioinformatics

  Bioinformatics analysis scripts, workflows, general code examples

  Language:Shell5214