ElpadoCan
Creator of the Bioimage analysis tool Cell-ACDC @SchmollerLab. Computational Cell Biology Research Scientist. Engineer by training
Helmholz Zentrum MunichMunich, Germany
Pinned Repositories
anndata
Annotated data.
Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
cellpose_omni
a generalist algorithm for cellular segmentation
ChromRings
Python package to quantify chromatin reorganizaiton in C. Elegans upon starvation
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
DeepSea
An efficient deep learning model for single-cell segmentation and tracking of time-lapse microscopy images
ElpadoCan
My GitHub profile repository
epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
FastSAM
Fast Segment Anything
napari
napari: a fast, interactive, multi-dimensional image viewer for python
ElpadoCan's Repositories
ElpadoCan/Cell_ACDC
A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
ElpadoCan/anndata
Annotated data.
ElpadoCan/cellpose_omni
a generalist algorithm for cellular segmentation
ElpadoCan/ChromRings
Python package to quantify chromatin reorganizaiton in C. Elegans upon starvation
ElpadoCan/core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
ElpadoCan/DeepSea
An efficient deep learning model for single-cell segmentation and tracking of time-lapse microscopy images
ElpadoCan/ElpadoCan
My GitHub profile repository
ElpadoCan/epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
ElpadoCan/FastSAM
Fast Segment Anything
ElpadoCan/napari
napari: a fast, interactive, multi-dimensional image viewer for python
ElpadoCan/ncolor-acdc
Cell-ACDC implementation of ncolor used by omnipose
ElpadoCan/omnipose-acdc
Omnipose: a high-precision solution for morphology-independent cell segmentation
ElpadoCan/pomBseen
Python implementation of pomBseen
ElpadoCan/pyqtgraph
Fast data visualization and GUI tools for scientific / engineering applications
ElpadoCan/pytorch3dunet
3D U-Net model for volumetric semantic segmentation
ElpadoCan/qtmodern
PyQt/PySide Widgets Modern User Interface
ElpadoCan/readTheDocs-tutorial
Tutorial for read the docs
ElpadoCan/scikit-image
Image processing in Python
ElpadoCan/spec-bioimage-io
Specification for the bioimage.io model description file.
ElpadoCan/spotiflow
Accurate and efficient spot detection for microscopy data
ElpadoCan/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
ElpadoCan/stardist
StarDist - Object Detection with Star-convex Shapes
ElpadoCan/TAPIR
TAPIR: Tracking Any Point with per-frame Initialization and temporal Refinement
ElpadoCan/trackastra
ElpadoCan/YeaZ
An interactive tool for segmenting yeast cells using deep learning.