Pinned Repositories
analyze_1.1.3.15
Code to analyze the 1.1.3.15 experimental data
brenparse
A library for parsing out data from the BRENDA database html files
cheminformatics
DeepET_reps
An installable library to get DeepET representations.
fetch_microbial_growth_temperatures
Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.
orgtools
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
Supplemetenary_scripts_datasets_R2LG
This repo contains the supplementary scripts and datasets for Li G, et al, 2019 (https://arxiv.org/abs/1912.08141).
Tome
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
tome_cool
Improve the prediction OGT of psychrophiles
UniRep50
A slighlty modified version of the UniRep model
EngqvistLab's Repositories
EngqvistLab/Tome
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
EngqvistLab/fetch_microbial_growth_temperatures
Code to go with the https://doi.org/10.1101/271569 publication. Downloads html pages from culture-collection centers and mines these for growth temperature data.
EngqvistLab/UniRep50
A slighlty modified version of the UniRep model
EngqvistLab/DeepET_reps
An installable library to get DeepET representations.
EngqvistLab/cheminformatics
EngqvistLab/orgtools
A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.
EngqvistLab/Supplemetenary_scripts_datasets_R2LG
This repo contains the supplementary scripts and datasets for Li G, et al, 2019 (https://arxiv.org/abs/1912.08141).
EngqvistLab/analyze_1.1.3.15
Code to analyze the 1.1.3.15 experimental data
EngqvistLab/brenparse
A library for parsing out data from the BRENDA database html files
EngqvistLab/tome_cool
Improve the prediction OGT of psychrophiles
EngqvistLab/reproducible-reports-init
A template library for use in making research reports/grant proposals follow standard guidelines
EngqvistLab/yeast_xylanase
A bioinformatic analysis was carried out with the goal of identifying carbohydrate-active enzymes in 332 published yeast genomes.
EngqvistLab/biomark_assays
Enzyme kinetic assays in the Fluidigm Biomark HD instrument
EngqvistLab/DeepET
Summary of scripts and results for the manuscript
EngqvistLab/Supplementary_scripts_Tome1.0