EngreitzLab/variant-flowfish

Issues

• add reference alignment error threshold in AmpliconInfo.tsv and read into aggregate_variants function

  #8 opened 3 years ago
  1

• make_count_tables refactor

  #7 opened 3 years ago
  3

• move variant matching to before MLE (maybe in make_count_tables rule)

  #6 opened 3 years ago
  1

• make_count_tables is picking the first reference_sequence arbitrarily

  #5 opened 3 years ago
  1

• write rule to run alignment of sample sequences to PhiX with bowtie2

  #4 opened 3 years ago
  0

• make sure count table is sorted so that trim_count_table rule works

  #3 opened 3 years ago
  1

• fix make_count_tables.smk

  #2 opened 3 years ago
  1