Pinned Repositories
AHMbook
Functions for the book 'Applied Hierarchical Modeling in Ecology'
analysis_of_ecological_data
Course Material
archidart
source code of the r package
awesome-datascience
:memo: An awesome Data Science repository to learn and apply for real world problems.
awesome-R
A curated list of awesome R packages, frameworks and software.
BDA_py_demos
Bayesian Data Analysis demos for Python
BDA_R_demos
Bayesian Data Analysis demos for R
BiomeSpecificResponsesPublic
A public release of the code used in the paper "Tropical and Mediterranean biodiversity is disproportionately sensitive to land-use and climate change"
Bison-Fly
Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.
RiA2
Source code for R in Action, Second Edition
Eric-1986's Repositories
Eric-1986/analysis_of_ecological_data
Course Material
Eric-1986/archidart
source code of the r package
Eric-1986/Bison-Fly
Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to build this platform in partnership with Drone2Phenome community.
Eric-1986/leafarea
investigating leaf growth data
Eric-1986/canopy_structure
Scripts for analyzing crop canopy structure measured by UAS digital surface models.
Eric-1986/DeePore
Deep learning for rapid characterization of porous materials
Eric-1986/Doing-Meta-Analysis-in-R
All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"
Eric-1986/esmarconf2022_workshop
Meta-Analysis with R Workshop
Eric-1986/faCRSA
An automated pipeline for high-throughput analysis of crop root system architecture.
Eric-1986/FIELDimageR
FIELDimageR: A R package to analyze orthomosaic images from agricultural field trials. This package is a compilation of functions to analyze pos-mosaicking images from research fields, and allows to: crop the image; remove soil effect; build vegetation indices; rotate the image; build the plot shapefile; extract information for each plot; and evaluate stand count, canopy percentage, and plant height.
Eric-1986/Fish-modularity-and-nmplssem
Processed data and code for conducting bipartite network modularity analysis and analyzing modules by non-metric partial least-squares structural equation models paired with multiple logistic regression under a variation partitioning framework. Used for "Loewen et al. 2021. Bioregions are predominantly climatic for fishes of northern lakes. Global Ecology and Biogeography."
Eric-1986/gpt_academic
为ChatGPT/GLM提供实用化交互界面,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm2等本地模型。兼容文心一言, moss, llama2, rwkv, claude2, 通义千问, 书生, 讯飞星火等。
Eric-1986/hybridBiotInterFoam
OpenFOAM solver for performing single- and two-phase flow simulations on hybrid-scale deformable porous media.
Eric-1986/hybridPorousInterFoam
OpenFOAM solver for performing single- and two-phase flow simulations on hybrid-scale porous media.
Eric-1986/Hydraulic-Fracturing
FEM package in Matlab for hydraulic fracturing in transversely isotropic porous media
Eric-1986/LeafArea-1
An interface for the image processing program ImageJ, which allows a rapid digital image analysis for particle sizes.
Eric-1986/MATBOX_Microstructure_analysis_toolbox
MATBOX is an open-source MATLAB toolbox dedicated to microstructure analsyis of porous/heterogeneous materials
Eric-1986/meta_analysis_books
R code for meta-analysis books
Eric-1986/modelling-leaf-growth
A model to predict the structure of a leaf with minimized computational cost
Eric-1986/pcse_notebooks
A collection of Jupyter notebooks that demonstrate usage of PCSE
Eric-1986/Peanut-maize-intercropping-microbiome
Eric-1986/plantcv
Plant phenotyping with image analysis
Eric-1986/plantFEM
This is a plant/farming simulator based on Finite Element Method, which targets crops in fields. This software provides multi-physical simulations of agriculture for canopies, plants, and organs for farmers, breeders, and agronomists. Please try and give us feedback. This github-page is a mirror of the following gitlab-page.
Eric-1986/porepy
Python Simulation Tool for Fractured and Deformable Porous Media
Eric-1986/porespy
A set of tools for characterizing and analying 3D images of porous materials
Eric-1986/Porous_Material_101
Tutorial repository of introduction to porous materials using MATLAB
Eric-1986/puma
Eric-1986/RhizoVisionExplorer
Application to extract features from plant root images
Eric-1986/strip-intercropping_pestcontrol
This repository contains all codes for implementing the multiscale SDM modelling framework described in Alarcón-Segura, V., Grass, I., Breustedt, G., Rohlfs, M. & Tscharntke, T. (2022). Strip intercropping of wheat and oilseed rape enhances biodiversity and biological pest control in a conventionally managed farm scenario. Journal of Applied Ecology, 00, 1– 11. https://doi.org/10.1111/1365-2664.14161. Please acknowledge this paper when using the code or data outputs.
Eric-1986/WOFOST_crop_parameters
Parameter sets for the WOFOST crop simulation model implemented in YAML