EricFournier3
Bioinformatician at the Laboratoire de santé publique du Québec
Laboratoire de santé publique du Québec (LSPQ)Montréal, Qc, Canada
Pinned Repositories
auspice
Web app for visualizing pathogen evolution
chewBBACA
BSR-Based Allele Calling Algorithm
LegioCluster
NGS analysis and clustering pipeline for bacteria undergoing frequent recombination, such as Legionella
legsta
🍗⭐ In silico Legionella pneumophila Sequence Based Typing
lineages
Resources for calling and describing the circulating lineages of SARS-CoV-2
mompS
Whole genome sequencing (WGS) has revolutionized the subtyping of L. pneumophila (Lp) but calling the traditional sequence based type from genomic data is hampered by presence of multiple copies of the mompS locus. We propose a novel bioinformatics solution for rectifying that limitation, ensuring the feasibility of WGS for cluster investigation.
myproject
myproject2
ncov-random-scripts
pangoLEARN
Store of the trained model for pangolin to access.
EricFournier3's Repositories
EricFournier3/auspice
Web app for visualizing pathogen evolution
EricFournier3/chewBBACA
BSR-Based Allele Calling Algorithm
EricFournier3/LegioCluster
NGS analysis and clustering pipeline for bacteria undergoing frequent recombination, such as Legionella
EricFournier3/legsta
🍗⭐ In silico Legionella pneumophila Sequence Based Typing
EricFournier3/lineages
Resources for calling and describing the circulating lineages of SARS-CoV-2
EricFournier3/mompS
Whole genome sequencing (WGS) has revolutionized the subtyping of L. pneumophila (Lp) but calling the traditional sequence based type from genomic data is hampered by presence of multiple copies of the mompS locus. We propose a novel bioinformatics solution for rectifying that limitation, ensuring the feasibility of WGS for cluster investigation.
EricFournier3/myproject
EricFournier3/myproject2
EricFournier3/ncov-random-scripts
EricFournier3/pangoLEARN
Store of the trained model for pangolin to access.
EricFournier3/pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
EricFournier3/phylo_snv_v2
EricFournier3/RemoteTesting
EricFournier3/SNVPhyl_Nextflow
Nextflow version of SNVPhyl
EricFournier3/test_git
test git remote
EricFournier3/test_remote_git
test remote git
EricFournier3/testpull
EricFournier3/Wastewater_Analysis_Pipeline
Work in progress