EricKenjiLee

CaterPy

This is an analysis package made for the application of spectral decompositions for dimensionality reduction on Python

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

COSYNE2023_Posters

Cosyne2024

DecisionMakingDynamics

Code used in the Chandrasekaran Lab to analyze the population activity of neurons recorded from prefrontal cortex in NHP's performing decision-making tasks

DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

erickenjilee.github.io

Sometimes neuroscience. Sometimes math. Sometimes data science. Always my thoughts!

Eye-tracking-poster---SfN2017

This is the final version of the poster "The Incorporation and Uses of Eye Tracking in a Large-Scale Pipeline for the Allen Brain Observatory " presented at SfN 2017

PhysMAP_Manuscript

This repo is provided for the reproduction of figures and analyses found in the manuscript Lee et al. 2024, bioRxiv. It should be useful for both reviewers and interested researchers.

WaveMAP_Paper

This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.

EricKenjiLee/WaveMAP_Paper

This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.

EricKenjiLee/PhysMAP_Manuscript

This repo is provided for the reproduction of figures and analyses found in the manuscript Lee et al. 2024, bioRxiv. It should be useful for both reviewers and interested researchers.

EricKenjiLee/erickenjilee.github.io

Sometimes neuroscience. Sometimes math. Sometimes data science. Always my thoughts!

EricKenjiLee/CaterPy

This is an analysis package made for the application of spectral decompositions for dimensionality reduction on Python

EricKenjiLee/cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

EricKenjiLee/COSYNE2023_Posters

EricKenjiLee/Cosyne2024

EricKenjiLee/DecisionMakingDynamics

Code used in the Chandrasekaran Lab to analyze the population activity of neurons recorded from prefrontal cortex in NHP's performing decision-making tasks

EricKenjiLee/DeepLabCut

Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

EricKenjiLee/Eye-tracking-poster---SfN2017

This is the final version of the poster "The Incorporation and Uses of Eye Tracking in a Large-Scale Pipeline for the Allen Brain Observatory " presented at SfN 2017

EricKenjiLee/flexcat-spiking

Flexible categorization dynamics in spiking neural networks of perceptual decision making

EricKenjiLee/fnn

Embed strange attractors using a regularizer for autoencoders

EricKenjiLee/GRS2022_NBC_Poster

Poster for the Gordon Research Symposium - Neurobiology of Cognition conference in 2022

EricKenjiLee/HVA_Classifier

HVA classification for AMATH 582

EricKenjiLee/GLMCC

GLMCC: The generalized linear model for spike cross-correlation (Kobayashi et al., Nature Communications, 2019)

EricKenjiLee/imgprep

[imgprep] image preparation python script for my microscopy workflow

EricKenjiLee/lif_stochastic

code associated with "Dynamics of stochastic integrate-and-fire networks"

EricKenjiLee/LinearModelsLab

This is the repo for our linear models lab looking at bike data

EricKenjiLee/NeuroPyxels

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

EricKenjiLee/PhotoinhibitionCharaterization

Photoinhibition Charaterization Paper, Li et al 2019

EricKenjiLee/phy_debug

phy: interactive visualization and manual spike sorting of large-scale ephys data

EricKenjiLee/pymssa

Python implementation of Multivariate Singular Spectrum Analysis (MSSA)

EricKenjiLee/python-neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats

EricKenjiLee/pyWNN

Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)

EricKenjiLee/SfN2022_Poster

EricKenjiLee/SfNGlobalConnectome2021

EricKenjiLee/shap

A game theoretic approach to explain the output of any machine learning model.

EricKenjiLee/STAR_Protocol_WaveMAP

EricKenjiLee/UMAP-examples-mammoth-

EricKenjiLee/WaveMAP

Nonlinear dimesionality reduction and graph community detection on waveforms.