EricKenjiLee
Ph.D. Student in the Chandrasekaran lab at Boston University. Formerly Allen Institute/UW/University of Puget Sound.
Boston UniversityBoston, MA
Pinned Repositories
CaterPy
This is an analysis package made for the application of spectral decompositions for dimensionality reduction on Python
cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
COSYNE2023_Posters
Cosyne2024
DecisionMakingDynamics
Code used in the Chandrasekaran Lab to analyze the population activity of neurons recorded from prefrontal cortex in NHP's performing decision-making tasks
DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
erickenjilee.github.io
Sometimes neuroscience. Sometimes math. Sometimes data science. Always my thoughts!
Eye-tracking-poster---SfN2017
This is the final version of the poster "The Incorporation and Uses of Eye Tracking in a Large-Scale Pipeline for the Allen Brain Observatory " presented at SfN 2017
PhysMAP_Manuscript
This repo is provided for the reproduction of figures and analyses found in the manuscript Lee et al. 2024, bioRxiv. It should be useful for both reviewers and interested researchers.
WaveMAP_Paper
This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.
EricKenjiLee's Repositories
EricKenjiLee/WaveMAP_Paper
This repo allows for the complete reproduction, from processed data, of all the main and supplemental figures in the manuscript Non-linear Dimensionality Reduction on Extracellular Waveforms Reveals Physiological, Functional, and Laminar Diversity in Premotor Cortex.
EricKenjiLee/PhysMAP_Manuscript
This repo is provided for the reproduction of figures and analyses found in the manuscript Lee et al. 2024, bioRxiv. It should be useful for both reviewers and interested researchers.
EricKenjiLee/erickenjilee.github.io
Sometimes neuroscience. Sometimes math. Sometimes data science. Always my thoughts!
EricKenjiLee/CaterPy
This is an analysis package made for the application of spectral decompositions for dimensionality reduction on Python
EricKenjiLee/cookiecutter-data-science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.
EricKenjiLee/COSYNE2023_Posters
EricKenjiLee/Cosyne2024
EricKenjiLee/DecisionMakingDynamics
Code used in the Chandrasekaran Lab to analyze the population activity of neurons recorded from prefrontal cortex in NHP's performing decision-making tasks
EricKenjiLee/DeepLabCut
Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
EricKenjiLee/Eye-tracking-poster---SfN2017
This is the final version of the poster "The Incorporation and Uses of Eye Tracking in a Large-Scale Pipeline for the Allen Brain Observatory " presented at SfN 2017
EricKenjiLee/flexcat-spiking
Flexible categorization dynamics in spiking neural networks of perceptual decision making
EricKenjiLee/fnn
Embed strange attractors using a regularizer for autoencoders
EricKenjiLee/GRS2022_NBC_Poster
Poster for the Gordon Research Symposium - Neurobiology of Cognition conference in 2022
EricKenjiLee/HVA_Classifier
HVA classification for AMATH 582
EricKenjiLee/GLMCC
GLMCC: The generalized linear model for spike cross-correlation (Kobayashi et al., Nature Communications, 2019)
EricKenjiLee/imgprep
[imgprep] image preparation python script for my microscopy workflow
EricKenjiLee/lif_stochastic
code associated with "Dynamics of stochastic integrate-and-fire networks"
EricKenjiLee/LinearModelsLab
This is the repo for our linear models lab looking at bike data
EricKenjiLee/NeuroPyxels
NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.
EricKenjiLee/PhotoinhibitionCharaterization
Photoinhibition Charaterization Paper, Li et al 2019
EricKenjiLee/phy_debug
phy: interactive visualization and manual spike sorting of large-scale ephys data
EricKenjiLee/pymssa
Python implementation of Multivariate Singular Spectrum Analysis (MSSA)
EricKenjiLee/python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
EricKenjiLee/pyWNN
Weighted Nearest Neighbors Analysis implemented in Python (pyWNN)
EricKenjiLee/SfN2022_Poster
EricKenjiLee/SfNGlobalConnectome2021
EricKenjiLee/shap
A game theoretic approach to explain the output of any machine learning model.
EricKenjiLee/STAR_Protocol_WaveMAP
EricKenjiLee/UMAP-examples-mammoth-
EricKenjiLee/WaveMAP
Nonlinear dimesionality reduction and graph community detection on waveforms.