EricThomson

Data Science: Flatiron Institute Center for Computational NeuroscienceDurham, NC

Pinned Repositories

CCN_caiman_mesmerize_workshop_2023
Repo for CCN workshop on caiman and mesmerize in January 2023
Language:Jupyter Notebook12 4 139
covid-mapping
Using Python to visualize coronavirus data
Language:Jupyter Notebook2 3 03
gigadetector
Object detection pipeline for images much too large to fit in GPU
Language:Python2 3 01
git_learn
Tutorial on learning git/github essentials
11 2 00
nightmare_invasion
Space invaders clone with My Little Pony characters
Language:Python2 2 00
pandastim
Generate visual stimuli using panda3d
Language:Python5 3 02
practical_python
Learn just enough Python to start analyzing and visualizing data.
Language:Jupyter Notebook5 4 04
PySideSummer
PySide port of Summerfield's book 'Rapid GUI Programming with Python and Qt.'
Language:Python49 8 126
tfrecord-view
Consume and view contents of TFRecord files (for Tensorflow's object detection api)
Language:Python20 4 15
yacare
Companion to CaImAn for calcium imaging analysis.
Language:Jupyter Notebook4 4 03

EricThomson's Repositories

EricThomson/tfrecord-view
Consume and view contents of TFRecord files (for Tensorflow's object detection api)
Language:Python20 4 15
EricThomson/CCN_caiman_mesmerize_workshop_2023
Repo for CCN workshop on caiman and mesmerize in January 2023
Language:Jupyter Notebook12 4 139
EricThomson/git_learn
Tutorial on learning git/github essentials
11 2 00
EricThomson/practical_python
Learn just enough Python to start analyzing and visualizing data.
Language:Jupyter Notebook5 4 04
EricThomson/yacare
Companion to CaImAn for calcium imaging analysis.
Language:Jupyter Notebook4 4 03
EricThomson/covid-mapping
Using Python to visualize coronavirus data
Language:Jupyter Notebook2 3 03
EricThomson/gigadetector
Object detection pipeline for images much too large to fit in GPU
Language:Python2 3 01
EricThomson/tiffit
Do simple things with multi-page tiff files
Language:Python2 2 20
EricThomson/anaties
anaties (analysis utilities): utilities for analysis of data
Language:Python1 2 00
EricThomson/CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Language:Python1 1 0
EricThomson/deepglue
Deep learning utilities for pytorch
Language:Python1
EricThomson/movie-crop
Crop movies using Python
Language:Python1 2 0
EricThomson/vp_retrain
Notebook to retrain volpy mask-rcnn using torch
Language:Jupyter Notebook1 1 01
EricThomson/animatplot
A python package for animating plots build on matplotlib.
Language:Python1 0
EricThomson/ccn-template
Template repository for CCN software projects
EricThomson/course-content-dl
NMA deep learning course
Language:Jupyter Notebook0 0
EricThomson/d2l-en
Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.
Language:Python0 0
EricThomson/DeepLabCut
Markerless pose estimation of user-defined features with deep learning for all animals, including humans
EricThomson/earlybird
To-do tree application.
Language:Python1
EricThomson/ezsaver
Save and load variables in Python quickly, without thinking about it too much
Language:Python2 0
EricThomson/fastplotlib
Next-gen fast plotting library running on WGPU using the pygfx rendering engine
Language:Python0 0
EricThomson/image_sandbox
Images to use in colab notebooks temporarily
1 0
EricThomson/LLMs-from-scratch
Implementing a ChatGPT-like LLM in PyTorch from scratch, step by step
Language:Jupyter Notebook
EricThomson/mandelviews
View mandelbrot sets, example repo implementing guidelines at CCN template
Language:Python1 0
EricThomson/MESmerize
Platform for Calcium Imaging analysis
Language:Python
EricThomson/mesmerize-core
High level pandas-based API for batch analysis of Calcium Imaging data using CaImAn
Language:Jupyter Notebook1 0
EricThomson/mesmerize_setup
Getting started with Mesmerize on Windows.
2 0
EricThomson/nemos
NEural MOdelS, a statistical modeling framework for neuroscience.
Language:Python
EricThomson/OpenDS4All
OpenDS4All project, hosted by LF AI & Data
Language:HTML0 0
EricThomson/Zotero-Report-Cleaner
Customises and streamlines reports generated from Zotero.
Language:Python0 0