EthanZhaoChem

PhD candidate at the University of Chicago.

Pinned Repositories

ArchRtoSignac
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
Language:R00
cisTopic_Ethan
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
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Code_documentation_2023_IBD_pouch_paper
The code documentation for RC2 pouch paper studying IBD.
Language:Jupyter Notebook00
Coronary_snATAC
https://doi.org/10.1038/s41588-022-01069-0
Language:Jupyter Notebook00
eGTEx_mQTLs_eQTLs_GWAS
https://doi.org/10.1038/s41588-022-01248-z
Language:R00
R-lda
Latent Dirichlet allocation package for R
Language:C00
scATACseq-topics
Analysis of single-cell ATAC-seq data using topic models.
Language:R00
singlecellLDSC
ldsc and post processing
Language:HTML00
text2vec
Fast vectorization, topic modeling, distances and GloVe word embeddings in R.
Language:R00
torus
QTL Discovery using Annotations
Language:C++00

EthanZhaoChem/ArchRtoSignac
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
Language:R00
EthanZhaoChem/cisTopic_Ethan
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Language:HTML00
EthanZhaoChem/Code_documentation_2023_IBD_pouch_paper
The code documentation for RC2 pouch paper studying IBD.
Language:Jupyter Notebook00
EthanZhaoChem/Coronary_snATAC
https://doi.org/10.1038/s41588-022-01069-0
Language:Jupyter Notebook00
EthanZhaoChem/eGTEx_mQTLs_eQTLs_GWAS
https://doi.org/10.1038/s41588-022-01248-z
Language:R00
EthanZhaoChem/R-lda
Latent Dirichlet allocation package for R
Language:C00
EthanZhaoChem/scATACseq-topics
Analysis of single-cell ATAC-seq data using topic models.
Language:R00
EthanZhaoChem/singlecellLDSC
ldsc and post processing
Language:HTML00
EthanZhaoChem/text2vec
Fast vectorization, topic modeling, distances and GloVe word embeddings in R.
Language:R00
EthanZhaoChem/torus
QTL Discovery using Annotations
Language:C++00