Pinned Repositories
ArchRtoSignac
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
cisTopic_Ethan
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Code_documentation_2023_IBD_pouch_paper
The code documentation for RC2 pouch paper studying IBD.
Coronary_snATAC
https://doi.org/10.1038/s41588-022-01069-0
eGTEx_mQTLs_eQTLs_GWAS
https://doi.org/10.1038/s41588-022-01248-z
R-lda
Latent Dirichlet allocation package for R
scATACseq-topics
Analysis of single-cell ATAC-seq data using topic models.
singlecellLDSC
ldsc and post processing
text2vec
Fast vectorization, topic modeling, distances and GloVe word embeddings in R.
torus
QTL Discovery using Annotations
EthanZhaoChem's Repositories
EthanZhaoChem/ArchRtoSignac
An R package performing object conversion from ArchRProject (ArchR) to Signac SeuratObject (Signac)
EthanZhaoChem/cisTopic_Ethan
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
EthanZhaoChem/Code_documentation_2023_IBD_pouch_paper
The code documentation for RC2 pouch paper studying IBD.
EthanZhaoChem/Coronary_snATAC
https://doi.org/10.1038/s41588-022-01069-0
EthanZhaoChem/eGTEx_mQTLs_eQTLs_GWAS
https://doi.org/10.1038/s41588-022-01248-z
EthanZhaoChem/R-lda
Latent Dirichlet allocation package for R
EthanZhaoChem/scATACseq-topics
Analysis of single-cell ATAC-seq data using topic models.
EthanZhaoChem/singlecellLDSC
ldsc and post processing
EthanZhaoChem/text2vec
Fast vectorization, topic modeling, distances and GloVe word embeddings in R.
EthanZhaoChem/torus
QTL Discovery using Annotations