Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype
ephypype works both with python2 and python3
- numpy
- scikit-learn
- ipywidgets
- matplotlib
- pandas
- mne
- nipype
- graphpype
Some of these dependencies you should install manually (see :ref:`conda_install`), others are installed automatically during ephypype installation (see :ref:`ephy_install`). To install graphpype see :ref:`graph_install`.
We also recommend to install the development master version of MNE python (see :ref:`mne_install`).
Note
If you have Anaconda it is possible to create an environment using python2 by the command
conda create -n py27 python=2.7 ipykernel
Warning
We also recommend to use the nipype version 0.13
pip install nipype==0.13
git clone https://github.com/neuropycon/ephypype.git
cd ephypype
pip install .
cd ..git clone https://github.com/neuropycon/graphpype.git
cd graphpype
pip install .
cd ..see README for more information.
git clone git://github.com/mne-tools/mne-python.git
cd mne-python
sudo python setup.py develop
cd ..see MNE python for more information.
conda install pandas
conda install ipywidgets
conda install matplotlib- Download Freesurfer software:
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall
- Follow the Installation instructions
https://surfer.nmr.mgh.harvard.edu/fswiki/LinuxInstall
- Download MNE software: