tomography_preprocessing
this repository has been archived as these programs are to be integrated into RELION from version 4.1
Installation
In a virtual environment
git clone https://github.com/alisterburt/tomo_preprocessing.git
cd tomo_preprocessing
pip install -e .Programs
| Job Type | Program |
|---|---|
| Import | relion_tomo_import SerialEM |
| Tilt-series alignment | relion_tomo_align_tilt_series IMOD:fiducials |
| Tilt-series alignment | relion_tomo_align_tilt_series IMOD:patch-tracking |
| Tilt-series alignment | relion_tomo_align_tilt_series AreTomo |
| Denoising (cryoCARE) | relion_tomo_denoise |
For CryoCARE denoising, please install this version: https://github.com/EuanPyle/cryoCARE_mpido
A helptext can be found for each program with
<program_name> --help