Pinned Repositories
BiocGenerics
S4 generic functions used in Bioconductor
BUSpaRse
R package to process BUS files
Caramia_2023
ceftools
DEPRECATED Tools for manipulating cell expression format (CEF) files
CN-pr-Allen-Brain
CN-pr-CalMS21
Mouse Social Behaviour classification
CN-pr-HCP
CN-pr-MDD-snRNA-seq
CN-pr-neuropixels-decisions
compneuro
EugOT's Repositories
EugOT/compneuro
EugOT/CN-pr-neuropixels-decisions
EugOT/Caramia_2023
EugOT/MUDAN
Multi-sample Unified Discriminant ANalysis
EugOT/mitochondrial_constraint
EugOT/scVI
Deep generative modeling for single-cell transcriptomics
EugOT/generecovery
EugOT/dotfiles.fish
my own dotfiles ported to fish
EugOT/rstudio-server-conda
Run Rstudio Server in a conda environment
EugOT/future-helm-chart
The helm chart for using R's future package on a kubernetes cluster.
EugOT/future-kubernetes-docker
A Docker container for use in a Kubernetes cluster with the R future package.
EugOT/telegroam
EugOT/SeuratWrappers
Community-provided extensions to Seurat
EugOT/trendsceek
Identify genes with spatial expression trends in single-cell gene expression data
EugOT/conos
Clustering on Network of Samples
EugOT/BUSpaRse
R package to process BUS files
EugOT/BiocGenerics
S4 generic functions used in Bioconductor
EugOT/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
EugOT/SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
EugOT/velocyto.R
RNA velocity estimation in R
EugOT/harmony
Scalable integration of single cell RNAseq data for batch correction and meta analysis
EugOT/schex
EugOT/pagoda2
R package for analyzing and interactively exploring large single-cell RNA-seq datasets
EugOT/MetaNeighbor
A method to rapidly assess cell type identity using both functional and random gene sets
EugOT/patchwork
The Composer of ggplots
EugOT/liger
R package for integrating and analyzing multiple single-cell datasets
EugOT/DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
EugOT/ceftools
DEPRECATED Tools for manipulating cell expression format (CEF) files
EugOT/cytograph
Algorithms for single-cell analysis
EugOT/slalom