Pinned Repositories
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
cowplot
cowplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
GAmetaGWAS
meta-analysis of GWAS results (GestAge, maternal)
gemma-gwas-scripts
A collection of scripts to aid mixed linear model based GWAS with GEMMA (https://github.com/genetics-statistics/GEMMA)
GWA_tutorial
A comprehensive tutorial about GWAS and PRS
gwaR
A package for GWA from GBLUP models
GWAS-MetaAnalysis
An application for performing meta-analysis comparison of a given gene set to detect disease traits and drug interactions.
gwas_gemma
Perform GWAS with gemma in a simple pipeline
GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
reveal.js
The HTML Presentation Framework
Evan1105's Repositories
Evan1105/GWAS_Pipelines
Instructions and helpful R code for Running GEMMA and GAPIT
Evan1105/reveal.js
The HTML Presentation Framework
Evan1105/ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
Evan1105/cowplot
cowplot: Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Evan1105/GAmetaGWAS
meta-analysis of GWAS results (GestAge, maternal)
Evan1105/gemma-gwas-scripts
A collection of scripts to aid mixed linear model based GWAS with GEMMA (https://github.com/genetics-statistics/GEMMA)
Evan1105/GWA_tutorial
A comprehensive tutorial about GWAS and PRS
Evan1105/gwaR
A package for GWA from GBLUP models
Evan1105/GWAS-MetaAnalysis
An application for performing meta-analysis comparison of a given gene set to detect disease traits and drug interactions.
Evan1105/gwas_gemma
Perform GWAS with gemma in a simple pipeline
Evan1105/gwas_scripts
Codebook from my GWAS cookbook
Evan1105/gwasanalytics
Gwasanalytics consists of a series of scripts that will analyze Gwas Catalog phenotypes and the input bed file from e.g. ChIP-Seq/ATAC-Seq experiment. Gwasanalytics scripts will calculate standard and modified binomial statistics, p-values and fold change for genomic overlaps between the input and various parsed GWAS categories.
Evan1105/GWASDataAnalysis
Functions to extract data from GWAS studies and optimize analysis of the GWAS catalog.
Evan1105/GWASMetaAnalysis
Scripts for common methods of GWAS meta anlaysis
Evan1105/labs
Rmd source files for the HarvardX series PH525x
Evan1105/LinuxUnix
2 reports (GWAS & ChIP-seq) and an automated ChIP-seq analysis
Evan1105/molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
Evan1105/R-CMplot
:four_leaf_clover:Circular Manhattan Plot
Evan1105/R_bilibili
Evan1105/the-art-of-command-line
Master the command line, in one page
Evan1105/UK_Biobank_GWAS
Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release