EvoEpi
Postdoc in Plant Biology at UGA researching epi[genetics|genomics] through the lens of evolution.
University of GeorgiaAthens, Georgia
Pinned Repositories
blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
clust
Automatic and optimised consensus clustering of one or more heterogeneous datasets
deepcpg
Deep neural networks for predicting CpG methylation
divtime
Bayesian molecular clock dating tutorial with genome-scale datasets
FASTKs
Pipeline for generate Ks plots of transcriptome data.
jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
mauve
A genome alignment and visualization system
perl
A collection of Perl scripts for handling various data files.
phylotree.js
Interactive viewer of phylogenetic trees
python
A collection of Python scripts for handling various data files.
EvoEpi's Repositories
EvoEpi/python
A collection of Python scripts for handling various data files.
EvoEpi/blobtools
Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
EvoEpi/clust
Automatic and optimised consensus clustering of one or more heterogeneous datasets
EvoEpi/deepcpg
Deep neural networks for predicting CpG methylation
EvoEpi/divtime
Bayesian molecular clock dating tutorial with genome-scale datasets
EvoEpi/FASTKs
Pipeline for generate Ks plots of transcriptome data.
EvoEpi/jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
EvoEpi/mauve
A genome alignment and visualization system
EvoEpi/perl
A collection of Perl scripts for handling various data files.
EvoEpi/phylotree.js
Interactive viewer of phylogenetic trees
EvoEpi/popgen-notes
Population genetics notes
EvoEpi/r
A collection of R scripts for analysis of biological data, plotting, and stats.
EvoEpi/tutorials
Example workflows to process ChIP-seq, RNA-seq (mRNA and sRNA), and WGBS.
EvoEpi/unix
UNIX commands and tips