/biobox

Primary LanguageGo

biobox

Description

Tools for bioinformatics, many of which are also used in our book Bioinformatics for Evolutionary Biologists.

Author

Bernhard Haubold, haubold@evolbio.mpg.de

Windows/Ubuntu

  • Install Windows Subsystem for Linux

  • Clone repo and install additional packages

    git clone https://github.com/evolbioinf/biobox
    cd biobox
    bash scripts/setup.sh

  • Make package

    make

    The directory bin should now contain the programs listed in progs.txt

macOS

  • Install X-Code

    xcode-select --install

  • Install Homebrew

  • Install packages

    brew tap brewsci/bio
    brew install brewsci/bio/libdivsufsort git gnuplot golang graphviz gsl tcl-tk xquartz
    git clone https://github.com/evolbioinf/biobox
    cd biobox

  • Make package

    make

    The directory bin should now contain the programs listed in progs.txt

License

GNU General Public License