ExaScience

Pinned Repositories

Aki-Predictor
Language:Python9 5 26
arrow-street
C++11 containers with "structures of arrays" or "arrays of structures" memory layout.
Language:C++11 7 03
bpmf
Julia and C++ implementations of Bayesian Probabilistic Matrix Factorization using Markov Chain Monte Carlo
Language:C++57 14 313
cl-elprep
elPrep: a high-performance tool for preparing sequencing alignment/map files in sequencing pipelines (Lisp version)
Language:Common Lisp14 5 03
elprep
elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
Language:Go289 18 6541
elprep-bench
elPrep reimplementations in C++ and Java, only for benchmark comparisons
Language:C++10 6 43
pargo
A library for parallel programming in Go
Language:Go189 11 27
Severo.jl
a software package for analysis and exploration of single-cell RNA-seq datasets
Language:Julia3 6 02
shark
Scalable Hybrid Array Kit (Shark)
Language:C++9 7 00
smurff
Bayesian Factorization with Side Information in C++ with Python wrapper
Language:C++69 10 14613

ExaScience's Repositories

ExaScience/elprep
elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.
Language:Go289 18 6541
ExaScience/pargo
A library for parallel programming in Go
Language:Go189 11 27
ExaScience/smurff
Bayesian Factorization with Side Information in C++ with Python wrapper
Language:C++69 10 14613
ExaScience/bpmf
Julia and C++ implementations of Bayesian Probabilistic Matrix Factorization using Markov Chain Monte Carlo
Language:C++57 14 313
ExaScience/cl-elprep
elPrep: a high-performance tool for preparing sequencing alignment/map files in sequencing pipelines (Lisp version)
Language:Common Lisp14 5 03
ExaScience/arrow-street
C++11 containers with "structures of arrays" or "arrays of structures" memory layout.
Language:C++11 7 03
ExaScience/elprep-bench
elPrep reimplementations in C++ and Java, only for benchmark comparisons
Language:C++10 6 43
ExaScience/Aki-Predictor
Language:Python9 5 26
ExaScience/shark
Scalable Hybrid Array Kit (Shark)
Language:C++9 7 00
ExaScience/ptra
Patient Trajectory Analysis Library
Language:Go7 6 02
ExaScience/cl-mongo-stream
A stream-oriented implemented of the MongoDB wire protocol for Common Lisp.
Language:Common Lisp4 6 00
ExaScience/Severo.jl
a software package for analysis and exploration of single-cell RNA-seq datasets
Language:Julia3 6 02
ExaScience/bwa
Burrow-Wheeler Aligner
Language:C2 6 0
ExaScience/process-plate
Language:Python2 6 51
ExaScience/cl-elprep-mongo
elPrep-mongo is an extension of elPrep that allows for using MongoDB databases as input and/or output targets in elPrep.
Language:Common Lisp1
ExaScience/Severo_jll.jl
Language:Julia1 7 0
ExaScience/vms
Virtual Molecule Screening benchmark
Language:C1 6 02
ExaScience/beam-road
5 0
ExaScience/cl-date-time-parser
Parse date-time-string, liberally.
Language:Common Lisp5 0
ExaScience/correct-platinum-fastq-sequence-identifier
Script for correcting sequence identifiers in Platinum whole genome sequences
Language:Go
ExaScience/ICU72hReadmissionMIMICIII
Prediction of ICU Readmissions Using Data at Patient Discharge using MIMICIII Database
Language:Python
ExaScience/Severo-experiments
Experiments for the Severo.jl package
ExaScience/VoC-Interview
6 0