ENV:python3 + pytorch1.0.0
Independent Package:wfdb、pickle、numpy、scipy、matplotlib
Used database Url:https://physionet.org/physiobank/database/qtdb/
Ref Rep:https://github.com/niekverw/Deep-Learning-Based-ECG-Annotator
This project achieved ECG signal wave segmentation,by using LSTM net.There are six waves:background/P Segment/PQ Seg/QR Seg/RS Seg/ST Seg,label is 0~6.
download qtdb,including .hed .q1c files
run python qtdatabase.py, it will generate train_data.pkl and val_data.pkl in folder "qtdb_pkl"
run python model_lstm.py to training LSTM Net, its result will be in folder "ckpt"
The characteristic waves of a heart beat
Please to read the source code and annotations
The figure shows the predict and label, for example, a couple of red lines, the upper is label, the lower is predict
several continue heart beat segment, please download branch multi_beats
| method | P-peak | Q-pose | R-peak | S-pose | T-peak |
|---|---|---|---|---|---|
| our | 0.34±2.92 | 0.03±0.84 | 0.03±0.32 | 0.18±1.00 | -0.06±1.29 |
| RAN | -0.4±10.1 | -0.7±10.9 | NA | -4.8±13.1 | -3.0±10.5 |
| CNN | 3.9±14.2 | -0.3±14 | NA | -6.6±15.2 | -4.5±17.2 |
| (ms) | P-peak | Q-pose | R-Peak | S-pose | T-Peak |
|---|---|---|---|---|---|
| 0.8 | 75.96% | 84.24% | 98.74% | 75.95% | 72.37% |
| 1.2 | 88.03% | 93.70% | 99.58% | 87.39% | 85.29% |
| 1.6 | 94.01% | 96.95% | 99.58% | 93.17% | 90.86% |
two-layers bi-LSTM + two Linear layer with dropout + softmax output