FKiffer

Pinned Repositories

AllenBrainAtlasCircularDendrogram-Mouse-CCFv3-
An exhaustive R-based circular dendrogram depicting the complete hierarchy of the Allen mouse brain atlas (CCFv3). This circular graph object can be transformed and included in analyses workflows for visualizing global or focused network information data of the global mouse brain.n
01
Deepethogram-Processing
Simple scripts to quickly process the output files from deepethogram with the most common behavioral measures
Language:Python00
19C
R notebooks for for statistical reporting of the NSRL19C project
Language:HTML00
DevelopmentalMilestonesBehavior
Stereolithography files for 3D printing modular behavioral apparatuses for testing the behavioral milestones of mouse development
01
deeplabcut-social-interaction
An application that cleans the pose estimation output from DeepLabCut and produces a CSV file containing information for the rodent social interaction test. Additionally, the application has a feature that allows for live video analysis of the behavioral test. This application was made specifically for the Eisch Lab at the Children's Hospital of Philadelphia and University of Pennsylvania.
Language:Python00
Landau-h
This script allows for the generation of sociomatrices, Landau's h, and DeVries' correction for missing samples for societies of variable size
Language:Jupyter Notebook00
19AFemalesSurvival
Statistics for survival analyses of the NSRL19A Females project
Language:HTML01
19AMalesHazardRatios
Statistical analyses for mouse survival
Language:Jupyter Notebook00
DeepLabCut
Experimental implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
Language:Python00
FKiffer
Config files for my GitHub profile.
00

FKiffer's Repositories

FKiffer/NSRL19AFemales
Statistics for the NSRL 19A Females project
Language:HTML1
FKiffer/AllenBrainAtlasCircularDendrogram-Mouse-CCFv3-
An exhaustive R-based circular dendrogram depicting the complete hierarchy of the Allen mouse brain atlas (CCFv3). This circular graph object can be transformed and included in analyses workflows for visualizing global or focused network information data of the global mouse brain.n
1
FKiffer/19C
R notebooks for for statistical reporting of the NSRL19C project
Language:HTML
FKiffer/19AFemalesSurvival
Statistics for survival analyses of the NSRL19A Females project
Language:HTML1
FKiffer/DevelopmentalMilestonesBehavior
Stereolithography files for 3D printing modular behavioral apparatuses for testing the behavioral milestones of mouse development
1
FKiffer/DeepLabCut
Experimental implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans
FKiffer/Deepethogram-Processing
Simple scripts to quickly process the output files from deepethogram with the most common behavioral measures
Language:Python
FKiffer/FKiffer
Config files for my GitHub profile.
FKiffer/deeplabcut-social-interaction
An application that cleans the pose estimation output from DeepLabCut and produces a CSV file containing information for the rodent social interaction test. Additionally, the application has a feature that allows for live video analysis of the behavioral test. This application was made specifically for the Eisch Lab at the Children's Hospital of Philadelphia and University of Pennsylvania.
Language:Python
FKiffer/Landau-h
This script allows for the generation of sociomatrices, Landau's h, and DeVries' correction for missing samples for societies of variable size
FKiffer/19AMalesHazardRatios
Statistical analyses for mouse survival
Language:Jupyter Notebook