format of --annotation snp input
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CarolineOhrman commented
It would be convenient to be able to comment out lines in the snp file used as input for building the database and also to have a commentfield.
Proposed format
snp_id strain reference genome position derived_base ancestral_base comment
B.1 francisella Birdsell2014 OSU18 1710718 T C this is an optional free text comment field
B.2 francisella Vogler2009 OSU18 19938 T G
B.3 francisella Vogler2009 OSU18 1540403 T C
#B4 is one of the major branches
B.4 francisella Vogler2009 OSU18 1350634 A T position in SCHUS4 XXXX
B.5 francisella Vogler2009 OSU18 84943 T C
#B6 is one of the major branches
B.6 francisella Vogler2009 OSU18 1471420 T C
...