FOI-Bioinformatics/CanSNPer2

Issues

• Error with gaps in fasta file

  #28 opened 3 years ago by AleSR13
  7

• Software hang when dealing with large custom SNP-databases

  #41 opened 10 months ago by jaclew
  0

• Missing calls in database with custom SNPs

  #39 opened a year ago by jaclew
  0

• problem when downloading references for bacillus_anthracis.db

  #37 opened a year ago by rjsorr
  0

• NA to stdout but in summary its called

  #36 opened a year ago by CarolineOhrman
  0

• Missing output in *_snps.txt when SNP path is NA

  #35 opened a year ago by CarolineOhrman
  0

• root named "-root- -cellular organism"

  #34 opened a year ago by CarolineOhrman
  2

• more references in folder

  #33 opened a year ago by CarolineOhrman
  0

• Final call not correct

  #25 opened 4 years ago by CarolineOhrman
  0

• A node named root is hardcoded

  #32 opened 2 years ago by CarolineOhrman
  0

• tree file with ";" insted of tabs will lead to missing node warnings

  #31 opened 2 years ago by CarolineOhrman
  0

• issue with references

  #30 opened 2 years ago by joergFLI
  4

• No valid start SNP found

  #29 opened 2 years ago by CarolineOhrman
  2

• Missing (blue) nodes small in pdf

  #27 opened 4 years ago by CarolineOhrman
  0

• clean ambiguous nucleotides in submitted sequence

  #26 opened 4 years ago by Gilles179
  0

• summary file: missing results

  #24 opened 4 years ago by Gilles179
  2

• Installation issues

  #19 opened 4 years ago by druvus
  10

• Include contig and position in SNP list

  #23 opened 4 years ago by CarolineOhrman
  0

• format of --annotation snp input

  #22 opened 4 years ago by CarolineOhrman
  0

• Genomes with multiple sequences

  #21 opened 4 years ago by davve2
  0

• Download databases

  #20 opened 4 years ago by davve2
  0

• When a genome fail alignment to one ref, false result in tree pdf

  #13 opened 5 years ago by CarolineOhrman
  1

• Correct for mauve error

  #15 opened 5 years ago by davve2
  1

• Add ref and genome to progressiveMauvewarning on stdout

  #12 opened 5 years ago by CarolineOhrman
  0

• conda flextaxd not compatible

  #3 opened 5 years ago by CarolineOhrman
  1

• More contrast of node colors in tree pdf

  #6 opened 5 years ago by CarolineOhrman
  1

• logs dir need to exist

  #4 opened 5 years ago by CarolineOhrman
  0

• Output, export and --keep_temp when running --skip_mauve

  #5 opened 5 years ago by CarolineOhrman
  1

• Wrong output in "called_snps" file

  #7 opened 5 years ago by CarolineOhrman
  1

• tmp dir must exist

  #1 opened 5 years ago by CarolineOhrman
  1

• qt.qpa.xcb: could not connect to display

  #2 opened 5 years ago by CarolineOhrman
  1