/LongeviTE

Analysis of transposable elements in Drosophila populations selected for longevity through postponed reproduction

Primary LanguageR

Transposable element landscape in Drosophila populations selected for longevity

Analysis of transposable elements in Drosophila melanogaster populations selected for longevity through postponed reproduction.

Manuscript on bioRxiv: https://www.biorxiv.org/content/10.1101/867838v1

Additional output files on dryad: https://doi.org/10.5061/dryad.s7h44j13r

Contact: daniel.fabian@ebi.ac.uk

Manual:

  1. Please run scripts in the correct order (see number labels).
  2. Adjust folder names and paths to fit your system.
  3. All text ouputs are in the folder output_files. Most of these results are already in the supplementary material. Outputs not present on GitHub or in the supplementary material are available on dryad (doi:10.5061/dryad.s7h44j13r).
  4. To run R scripts, please make sure custom functions in R_functions.R are loaded.