FacundoCuba

FacundoCuba's Stars

• pytorch/torchchat

  Run PyTorch LLMs locally on servers, desktop and mobile

  Language:Python3.3k213

• 3b1b/manim

  Animation engine for explanatory math videos

  Language:Python69.5k6.1k

• WHO-Collaboratory/collaboratory-mpox-genomics-phylomasking

  6

• marcelm/cutadapt

  Cutadapt removes adapter sequences from sequencing reads

  Language:Python522129

• goldman-gp-ebi/SWAMPy

  Language:Python125

• rrwick/Porechop

  adapter trimmer for Oxford Nanopore reads

  Language:C++337128

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++28528

• Zhen-Tan-dmml/LLM4Annotation

  20612

• dccuchile/lightweight-spanish-language-models

  ALBETO and DistilBETO are versions of ALBERT and DistilBERT pre-trained exclusively on Spanish corpora.

  Language:Python302

• cjhutto/vaderSentiment

  VADER Sentiment Analysis. VADER (Valence Aware Dictionary and sEntiment Reasoner) is a lexicon and rule-based sentiment analysis tool that is specifically attuned to sentiments expressed in social media, and works well on texts from other domains.

  Language:Python4.4k1k

• bfelbo/DeepMoji

  State-of-the-art deep learning model for analyzing sentiment, emotion, sarcasm etc.

  Language:Python1.5k313

• gtonkinhill/rhierbaps

  rhierbaps: R implementation of hierBAPS

  Language:R343

• CDCgov/MIRA

  Language:Python141

• aldengolab/hidden-markov-model

  A from-scratch Hidden Markov Model for hidden state learning from observation sequences.

  Language:Python5316

• EddyRivasLab/hmmer

  HMMER: biological sequence analysis using profile HMMs

  Language:C31770

• soedinglab/plass

  sensitive and precise assembly of short sequencing reads

  Language:C14714

• rrwick/Polypolish

  a short-read polishing tool for long-read assemblies

  Language:Rust1439

• nathanweeks/exonerate

  A fork of exonerate: a generic tool for sequence alignment

  Language:C6025

• sanger-pathogens/Roary

  Rapid large-scale prokaryote pan genome analysis

  Language:Perl323190

• CBPP/cbpp

  #!++, A CrunchBang revival project.

  Language:Shell36521

• rrwick/Trycycler

  A tool for generating consensus long-read assemblies for bacterial genomes

  Language:Python30728

• rrwick/Perfect-bacterial-genome-tutorial

  Language:Python11917

• Ecogenomics/GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  Language:Python47682

• ammaraziz/wfi

  whofluIRMA - influenza assembly pipeline

  Language:R92

• unetbootin/unetbootin

  UNetbootin installs Linux/BSD distributions to a partition or USB drive

  Language:C++2.3k308

• emiliomastriani/PIMGAVir

  PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer

  Language:Shell54

• voutcn/megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

  Language:C++594135

• phac-nml/ecoli_serotyping

  In silico prediction of E. coli serotype

  Language:Python4911

• nf-core/viralrecon

  Assembly and intrahost/low-frequency variant calling for viral samples

  Language:Nextflow122110

• AnJingwd/STRsearch

  STRsearch: a new pipeline for targeted profiling of short tandem repeats in amplicon-based sequencing data

  Language:Python91