Pinned Repositories
al-folio
A beautiful, simple, clean, and responsive Jekyll theme for academics
collab-workshop-st
UCLA QCBio col-laboratory workshop W31: spatial transcriptomics
mctseq_over_under_splitting
Analysis of over- and under-splitting of clustering for snmC2T-seq datasets
merfish_vizgen
Analysis of the MERFISH data from the mouse brain generated by Vizgen. In collaboration with Xiangmin Xu's lab from the University of California, Irvine.
multifish
EASI-FISH analysis pipeline for spatial transcriptomics
myvisctx
my visual cortex project
robustlink
A python package that links enhancers to genes using single-cell transcriptomes and epigenomes
scroutines
My single-cell genomics data analysis routines
SingleCellFusion_dev
Development version of SingleCellFusion--a tool to integrate single-cell genomics data
vision_and_visctx
For the manuscript: vision sculpts the continuum of L2/3 cell types in the visual cortex during the critical period
FangmingXie's Repositories
FangmingXie/collab-workshop-st
UCLA QCBio col-laboratory workshop W31: spatial transcriptomics
FangmingXie/scroutines
My single-cell genomics data analysis routines
FangmingXie/mctseq_over_under_splitting
Analysis of over- and under-splitting of clustering for snmC2T-seq datasets
FangmingXie/merfish_vizgen
Analysis of the MERFISH data from the mouse brain generated by Vizgen. In collaboration with Xiangmin Xu's lab from the University of California, Irvine.
FangmingXie/multifish
EASI-FISH analysis pipeline for spatial transcriptomics
FangmingXie/myvisctx
my visual cortex project
FangmingXie/robustlink
A python package that links enhancers to genes using single-cell transcriptomes and epigenomes
FangmingXie/vision_and_visctx
For the manuscript: vision sculpts the continuum of L2/3 cell types in the visual cortex during the critical period
FangmingXie/al-folio
A beautiful, simple, clean, and responsive Jekyll theme for academics
FangmingXie/collab_brian_na
collab projects
FangmingXie/easifish-proc
Tools and scripts for EASI-FISH image data analysis
FangmingXie/fangmingxie.github.io
FangmingXie/gitignore
A collection of useful .gitignore templates
FangmingXie/learngit
FangmingXie/merfish-proc
debugging thru MERFISH data
FangmingXie/methylscores
FangmingXie/minima
Minima is a one-size-fits-all Jekyll theme for writers.
FangmingXie/misc
Misc
FangmingXie/mouseVC
development of the binocular zone in the mouse visual cortex
FangmingXie/PaintSHOP_pipeline
A scalable machine learning pipeline for probe specificity prediction.
FangmingXie/pareto_interactions_py
FangmingXie/quickstart-merfish
A mini-project to get started on MERFISH data analysis
FangmingXie/scf_enhancer_paper
For SingleCellFusion enhancer paper
FangmingXie/SingleCellFusion_terra_docker
FangmingXie/SingleCellRoutines
A set of python utility functions to process single-cell sequencing data
FangmingXie/SnapTools
A module for working with snap files in Python
FangmingXie/snmCAT-seq_integration
FangmingXie/snmCAT-seq_SingleCellFusion_integration
FangmingXie/testgit
FangmingXie/wot
A software package for analyzing snapshots of developmental processes