Pinned Repositories
bcbio_test_cwlprov
The content is from an archived version from the documentation here: https://bcbio-nextgen.readthedocs.io/en/latest/contents/cwl.html#install-bcbio-vm-with-containers
bcbio_validation_workflows
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
cwl_workflows
Example CWL Workflows that run on team Helium PIVOT architecture.
cwlprov
Profile for provenance research object of a CWL workflow run
cwlprov-py
CWLProv toolkit
CwlWorkshop
ebi-metagenomics-cwl
This repository contains the CWL description of EBI Metagenomics pipeline
FarahZKhan.github.io
GATK-CaseStudy
GATK Variant Calling Workflow using Galaxy, CWL and Cpipe
GATK_tools
a test directory for GATK variant calling tools
FarahZKhan's Repositories
FarahZKhan/cwl_workflows
Example CWL Workflows that run on team Helium PIVOT architecture.
FarahZKhan/ebi-metagenomics-cwl
This repository contains the CWL description of EBI Metagenomics pipeline
FarahZKhan/bcbio_test_cwlprov
The content is from an archived version from the documentation here: https://bcbio-nextgen.readthedocs.io/en/latest/contents/cwl.html#install-bcbio-vm-with-containers
FarahZKhan/bcbio_validation_workflows
A community menagarie of automated variant validations using bcbio and the Common Workflow Language
FarahZKhan/cwlprov
Profile for provenance research object of a CWL workflow run
FarahZKhan/cwlprov-py
CWLProv toolkit
FarahZKhan/CwlWorkshop
FarahZKhan/FarahZKhan.github.io
FarahZKhan/GATK-CaseStudy
GATK Variant Calling Workflow using Galaxy, CWL and Cpipe
FarahZKhan/GATK_tools
a test directory for GATK variant calling tools
FarahZKhan/GSoC
OBF Google Summer of Code
FarahZKhan/gvl-melbgenomics-deploy
Scripts for creating flavours of Cpipe and LOVD for the GVL
FarahZKhan/imagegallery
FarahZKhan/imagehover
FarahZKhan/Monstera-cafe
FarahZKhan/MonsteraCafe
FarahZKhan/navbar
FarahZKhan/r-string-calc
git-tutorial
FarahZKhan/scalability-reproducibility-chapter
Data and workflow examples
FarahZKhan/tech_Startup
FarahZKhan/TechStartup
FarahZKhan/test_bcbio_cwl
Test workflows, run scripts and data for bcbio Common Workflow Language integration
FarahZKhan/testinghost
FarahZKhan/testingVS
FarahZKhan/toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
FarahZKhan/topmed-workflows
a place for topmed workflows
FarahZKhan/wordguessing
FarahZKhan/workflows
Community maintained workflows & tools (with examples)