FelixKrueger/Bismark

Issue with Perl in filter_non_conversion

edogiuili opened this issue · 4 comments

Hi,

While running the bismark docker container biocontainers/bismark:0.24.0--hdfd78af_0 (but the same issue arises also with the latest container versions), I face the following issue when using filter_non_conversion :

/usr/local/bin/filter_non_conversion: /usr/bin/perl: bad interpreter: No such file or directory

I think the problem might be due to the script shabang, which is still #!/usr/bin/perl as it was years ago before this commit . Do you think it might be possible to change it for this script as well?

Thanks!

Can you change the sheebang line to #!/usr/bin/env perl?

Oh I see, the shebang got changed back. When did that happen? ...

It should now be fixed in the dev version

Thanks!