FengLi12

FengLi12's Stars

• Significant-Gravitas/AutoGPT

  AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

  Language:Python168k44.4k

• TianxiangZhao/GraphSmote

  Pytorch implementation of paper 'GraphSMOTE: Imbalanced Node Classification on Graphs with Graph Neural Networks' to appear on WSDM2021

  Language:Python15229

• phanein/deepwalk

  DeepWalk - Deep Learning for Graphs

  Language:Python2.7k826

• tanaylab/metacell

  Metacell - Single-cell mRNA Analysis

  Language:R10830

• dmlc/dgl

  Python package built to ease deep learning on graph, on top of existing DL frameworks.

  Language:Python13.5k3k

• ZJUFanLab/scDeepSort_performance_comparison

  The source code and results for different methods on annotating external testing datsets of human and mouse.

  Language:R11

• zxin1023/pytorch_cluster

  PyTorch Extension Library of Optimized Graph Cluster Algorithms

  2

• OmicsML/dance

  DANCE: a deep learning library and benchmark platform for single-cell analysis

  Language:Python35235

• shap/shap

  A game theoretic approach to explain the output of any machine learning model.

  Language:Jupyter Notebook22.8k3.3k

• Philyzh8/scTAG

  "ZINB-based Graph Embedding Autoencoder for Single-cell RNA-seq Interpretations" in AAAI 2022

  Language:Python213

• cole-trapnell-lab/DDRTree

  An R implementation of the DDRTree algorithm for learning principal graphs

  Language:C++44

• lanagarmire/deepimpute

  An accurate and efficient deep learning method for single-cell RNA-seq data imputation

  Language:Python8427

• hyundoo/PRIME

  Language:R42

• dreamquark-ai/tabnet

  PyTorch implementation of TabNet paper : https://arxiv.org/pdf/1908.07442.pdf

  Language:Python2.6k487

• globality-corp/sklearn-hierarchical-classification

  Language:Python6516

• EdGENetworks/attention-networks-for-classification

  Hierarchical Attention Networks for Document Classification in PyTorch

  Language:Jupyter Notebook606133

• xmu-xiaoma666/External-Attention-pytorch

  🍀 Pytorch implementation of various Attention Mechanisms, MLP, Re-parameter, Convolution, which is helpful to further understand papers.⭐⭐⭐

  Language:Python11.5k1.9k

• eleozzr/desc

  Deep Embedding for Single-cell Clustering

  Language:Jupyter Notebook8823

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k350

• lcmmichielsen/scHPL

  Language:Jupyter Notebook341

• xy-chen16/EpiAnno

  Single-cell epigenomic data annotation via supervised non-linear embedding

  Language:Jupyter Notebook225

• ga642381/ML2021-Spring

  **Official** 李宏毅 (Hung-yi Lee) 機器學習 Machine Learning 2021 Spring

  Language:Jupyter Notebook838323

• theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

  Language:Jupyter Notebook1.4k458

• NBISweden/excelerate-scRNAseq

  Single RNA-seq data analysis with R (Finland, May, 2019)

  Language:HTML216107

• Diyago/Tabular-data-generation

  We well know GANs for success in the realistic image generation. However, they can be applied in tabular data generation. We will review and examine some recent papers about tabular GANs in action.

  Language:Python52681

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python438181

• pytorch/examples

  A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

  Language:Python22.4k9.5k

• asaini/Apriori

  Python Implementation of Apriori Algorithm for finding Frequent sets and Association Rules

  Language:Python771435

• GreenleafLab/ArchR_2020

  Publication Page for ArchR Manuscript 2020

  Language:HTML229

• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

  3.2k988