Note: This is a work in progress, if you stumble across this please note that the course has not yet been finalised, but feel free to have a look around if anything is useful.
Introduction to Napari
Introduction to Napari training course, run as part of the Crick Bioimage Analysis Symposium 2023
Course slides
https://docs.google.com/presentation/d/1XMpOllcfKLbBjMX4CYpHhNL0ldemzSqWyqyY85_n-sk/edit?usp=sharing
Getting the materials
Download the source from GitHub by clicking on the green "Code" button on this site.
and clicking on "Download ZIP.
Once this has downloaded, you can unzip the directory to your local filesystem. Alternatively, if you're familiar with git or GitHub, you can clone the repository to your local system.
Using the command line
Assuming you have completed the prerequisites, you should have a terminal application on your computer (either Terminal on Mac, or something like Anaconda Prompt on Windows). We'll need to use this for setting up the framework for Napari, for adding new plugins and for launching the application. Note that it is in principle possible to install as a bundled app, but it is strongly recommended to install as a python package at the time of this course (November 2023).
Useful resources
- Conda cheat sheet
- https://jni.github.io/using-python-for-science/intro-to-environments.html
- https://focalplane.biologists.com/2022/12/08/managing-scientific-python-environments-using-conda-mamba-and-friends/
- https://biapol.github.io/blog/mara_lampert/getting_started_with_mambaforge_and_python/readme.html