FranzKrah
Data Science in Life Science in South Germany
Technical University of MunichFreising, Germany
Pinned Repositories
ALE
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
chromer
package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il http://ropensci.org
ClimInd
:exclamation: This is a read-only mirror of the CRAN R package repository. ClimInd — Climate Indices. Homepage: https://gitlab.com/indecis-eu/indecis
ppMMr
Post-Processing of MotionMeerkat output in R
raup_crick
Fast version of raup_crick_abundance (Stegen et al. 2013)
rGUIDANCE
rGUIDANCE – alignment confidence score computation in R
rMyCoPortal
rMyCoPortal - an R package to interface with the Mycology Collections Portal
rSymbiota
Collection of interfaces to the Symbiota portals
timetree
Interface to the TimeTree of Life website
rusda
Interface to USDA Databases
FranzKrah's Repositories
FranzKrah/rMyCoPortal
rMyCoPortal - an R package to interface with the Mycology Collections Portal
FranzKrah/rSymbiota
Collection of interfaces to the Symbiota portals
FranzKrah/timetree
Interface to the TimeTree of Life website
FranzKrah/ppMMr
Post-Processing of MotionMeerkat output in R
FranzKrah/raup_crick
Fast version of raup_crick_abundance (Stegen et al. 2013)
FranzKrah/rGUIDANCE
rGUIDANCE – alignment confidence score computation in R
FranzKrah/ALE
Amalgamated likelihood estimation (ALE) is a probabilistic approach to exhaustively explore all reconciled gene trees that can be amalgamated as a combination of clades observed in a sample of gene trees. We implement the ALE approach in the context of a reconciliation model (cf. http://arxiv.org/abs/1211.4606 ), which allows for the duplication, transfer and loss of genes. We use ALE to efficiently approximate the sum of the joint likelihood over amalgamations and to find the reconciled gene tree that maximizes the joint likelihood among all such trees.
FranzKrah/chromer
package for interacting with the chromosome counts database (CCDB) at http://ccdb.tau.ac.il http://ropensci.org
FranzKrah/ClimInd
:exclamation: This is a read-only mirror of the CRAN R package repository. ClimInd — Climate Indices. Homepage: https://gitlab.com/indecis-eu/indecis
FranzKrah/CommunityEcology
Code and data for Community Ecology book
FranzKrah/cooccur
:exclamation: This is a read-only mirror of the CRAN R package repository. cooccur — Probabilistic Species Co-Occurrence Analysis in R
FranzKrah/cowsay
cowsay w/ more animals in R
FranzKrah/Deep-Learning
FranzKrah/DeepLearningBookCode-Volume2
Python/Jupyter notebooks for Volume 2 of "Deep Learning - From Basics to Practice" by Andrew Glassner
FranzKrah/detrending_in_R
FranzKrah/FranzKrah.github.io
My personal website
FranzKrah/gistr
Interact with GitHub gists from R
FranzKrah/hugo-academic
The website designer for Hugo. Build and deploy a beautiful website in minutes :rocket:
FranzKrah/hugo-resume
A Hugo theme ported from startbootrap.com's resume template
FranzKrah/knitr-examples
a collection of knitr examples
FranzKrah/mitolina
MITOchondrial LINeage Analysis
FranzKrah/mushroom_photos
FranzKrah/onboarding
rOpenSci Onboarding
FranzKrah/pilzeBRD
Schnittstelle zur Webseite 'http://brd.pilzkartierung.de' zum download von Artenlisten für MTBs
FranzKrah/rCSBI
Color Sampling from Biological Images
FranzKrah/rgbif
Wrapper to the Global Biodiversity Information Facility API
FranzKrah/rmycobank
FranzKrah/ShinyDeveloperConference
Materials collected from the First Shiny Developer Conference Palo Alto, CA January 30-31 2016
FranzKrah/tacmagic
tacmagic: PET Analysis in R