Set up the latest version of R in Ubuntu systems.
littler
(will be installed)bash
(will not be installed)
-
r_cran_mirror
: [default:http://cran.rstudio.com/
]: Your favorite CRAN mirror -
r_bioclite_url
: [default:https://bioconductor.org/biocLite.R
]: ThebiocLite.R
script URL for Bioconductor installs -
r_install_dev
: [default:false
]: Whether or not install ther-base-dev
package -
r_install
: [default:['littler']
]: Additional (apt) packages to install (e.g.r-recommended
) -
r_packages_lib
: [default:/usr/local/lib/R/site-library
]: The (default) library directory to install packages to -
r_packages_repos
: [default:"{{ r_cran_mirror }}"
]: The (default) URL to install packages from -
r_packages
: [default:[]
]: (CRAN) Packages to install or remove -
r_packages.{n}.name
: [required]: The name of the package -
r_packages.{n}.state
: [optional, default:present
]: The state of the package (e.g.updated
,absent
) -
r_packages.{n}.type
: [optional, default:cran
]: The type of the package (e.g.bioconductor
) -
r_packages.{n}.lib
: [optional, default:r_packages_lib
]: The library directory to install the package to -
r_packages.{n}.repos
: [optional, default:r_packages_repos
]: The URL to install the package from -
r_environment
: [default:{}
]: Environment variables to set (during the install, update or delete packages tasks)
None
---
- hosts: all
roles:
- r
---
- hosts: all
roles:
- r
vars:
r_install_dev: true
# apt packages
r_install:
- r-recommended
# cran, bioconductor or github (R) packages
r_packages:
- name: dplyr
- name: Biobase
type: bioconductor
- name: mangothecat/franc
type: github
MIT
Mischa ter Smitten
Are welcome!