FrederickHuangLin
Assistant Professor in Biostatistics
University of Maryland College ParkCollege Park
Pinned Repositories
ANCOM-BC-Code-Archive
Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
ANCOM-BC2-Code-Archive
Archive: Data, scripts, and outputs for the paper "Multi-group Analysis of Compositions of Microbiomes with Covariate Adjustments and Repeated Measures". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
ANCOM-Code-Archive
Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.
ANCOMBC
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
Gut-Microbiome-and-HIV-Infection
Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
Gut-Microbiome-and-Metabolic-Syndrome
The archive for data, scripts, and outputs for the paper "Bacterial and Immunological Mediators linking Caregiving with Metabolic Syndrome".
Gut-Microbiome-and-Sexual-Behavior
Scripts and outputs for the paper "High risk sexual behavior is linked to changes in gut microbiome and systemic inflammation that lead to HIV-1 infection in men who have sex with men"
MetVAE-PyPI
MetVAE PyPI code repository
Microbiome-Review-Code-Archive
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
SECOM-Code-Archive
Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.
FrederickHuangLin's Repositories
FrederickHuangLin/ANCOMBC
Differential abundance (DA) and correlation analyses for microbial absolute abundance data
FrederickHuangLin/ANCOM-Code-Archive
Archive: R functions for Analysis of Composition of Microbiomes (ANCOM). Please check our ANCOMBC R package for the most up-to-date ANCOM function.
FrederickHuangLin/ANCOM-BC-Code-Archive
Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
FrederickHuangLin/Microbiome-Review-Code-Archive
Data, scripts, and outputs for the npj Biofilms and Microbiomes paper "Analysis of microbial compositions: A review of normalization and differential abundance analysis"
FrederickHuangLin/SECOM-Code-Archive
Archive: Data, scripts, and outputs for the paper "Sparse Estimation of Correlations among Microbiomes (SECOM)". Please check our ANCOMBC R package for the most up-to-date SECOM functions.
FrederickHuangLin/ANCOM-BC2-Code-Archive
Archive: Data, scripts, and outputs for the paper "Multi-group Analysis of Compositions of Microbiomes with Covariate Adjustments and Repeated Measures". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC function.
FrederickHuangLin/Gut-Microbiome-and-HIV-Infection
Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
FrederickHuangLin/Gut-Microbiome-and-Metabolic-Syndrome
The archive for data, scripts, and outputs for the paper "Bacterial and Immunological Mediators linking Caregiving with Metabolic Syndrome".
FrederickHuangLin/Gut-Microbiome-and-Sexual-Behavior
Scripts and outputs for the paper "High risk sexual behavior is linked to changes in gut microbiome and systemic inflammation that lead to HIV-1 infection in men who have sex with men"
FrederickHuangLin/MetVAE-PyPI
MetVAE PyPI code repository
FrederickHuangLin/NMETH-A52201A-Reviewer-Comments
In response to reviewer #1
FrederickHuangLin/Oral-Microbiome-and-Chemical-Exposure
The archive for data, scripts, and outputs for the paper "Exposure to antibacterial chemicals is associated with altered composition of oral bacteria; the RHINESSA study, Bergen, Norway".
FrederickHuangLin/Asthma-SCFA-Project
Code Repository for the Paper: "A Study of Short-Chain Fatty Acids During the Canalicular and Early Saccular Phases of Fetal Lung Development and Childhood Asthma"
FrederickHuangLin/MetVAE-Code-Archive
About Archive: Data, scripts, and outputs for the paper "Variational Autoencoders for Metabolomics: Data Imputation, Deconfounding, and Correlation Discovery". Please check our MetVAE Python package for the most up-to-date MetVAE function.