Here is summary of what these directories contain:
calculate_Ka_Ks_pipeline/
: The pipeline used to compute Ka, Ks, and Ka/Ks for duplicated gene pairs.compute_pearson_r/
: The pipeline used to compute Pearson correlation coefficients (r) between expression profiles of the two gene copies.detect_gene_conversion/
: The pipeline used to detect gene conversion events.identify_Ks_peaks_by_fitting_GMM/
: The pipline used to infer the Ks peaks corresponding to WGD events of different ages by fitting Gaussian Mixture Model (GMM) to Ks distributions.