Troyanskaya Laboratory

DeepArk

Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning

ExPecto

predicting expression effects of human genome variants ab initio from sequence

function

Python library for functional genomics

giant-api

RESTful API for Functional Genomics

onboarding

Information for new Troyanskaya lab members

sei-framework

code to run sei and obtain sei and sequence class predictions

sei-manuscript

Code for reproducing the Sei manuscript results

selene

a framework for training sequence-level deep learning networks

sleipnir

tapioca

a framework for predicting global protein-protein interaction networks from dynamic mass spec data

FunctionLab/selene

a framework for training sequence-level deep learning networks

FunctionLab/ExPecto

predicting expression effects of human genome variants ab initio from sequence

FunctionLab/sei-framework

code to run sei and obtain sei and sequence class predictions

FunctionLab/tapioca

a framework for predicting global protein-protein interaction networks from dynamic mass spec data

FunctionLab/DeepArk

Modeling the genomic regulatory codes of fly, mouse, worm, and fish with deep learning

FunctionLab/sei-manuscript

Code for reproducing the Sei manuscript results

FunctionLab/giant-api

RESTful API for Functional Genomics

FunctionLab/function

Python library for functional genomics

FunctionLab/onboarding

Information for new Troyanskaya lab members

FunctionLab/diseasequest-docker

FunctionLab/sleipnir

FunctionLab/SPEEDI

Single-cell Pipeline for End to End Data Integration (SPEEDI)

FunctionLab/giant-api-biojs

BioJS connector for GIANT

FunctionLab/asd-pheno-classes

Scripts to generate figures and data.

FunctionLab/find_scripts

Code for training ontology-based CRF model for tissue-developmental stage-specific gene prediction

FunctionLab/flib

FunctionLab/HeartENN-models

Documentation and scripts to run HeartENN (Richter et al., 2020)

FunctionLab/dalliance

Interactive web-based genome browser.

FunctionLab/find_website_network

shiny app for FIND network visualization

FunctionLab/fntm-api

Template code and documentation for FNTM API

FunctionLab/ketl

konfigurable etl

FunctionLab/yenta

Yet 'Nother Taskrunner