Pinned Repositories
Atholl
datasets_class
Simulated Datasets for class use
Disk_check
dummy workflow to check gcp config
markdowns
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
test-datasets
Test data to be used for automated testing with the nf-core pipelines
test_data
test data repository to act as interim for nf-core
Varia
Repository for Varia package, containing Varia VIP and Varia GEM
Varia-var-gene-sequence-prediction
This version of Varia is outdated, please use the Varia repository. Varia predicts the sequence of var genes in Plasmodium falciparum. Varia is designed to use the DBL alpha tags supplied by the user to find the full sequenc of the var gene, by comparing the tag to the Pf3k database for near identical tag regions. It then clusters all hits and presents the largest sequence of each clusteron the Circos plot and in the summary files.
GCJMackenzie's Repositories
GCJMackenzie/Varia
Repository for Varia package, containing Varia VIP and Varia GEM
GCJMackenzie/Varia-var-gene-sequence-prediction
This version of Varia is outdated, please use the Varia repository. Varia predicts the sequence of var genes in Plasmodium falciparum. Varia is designed to use the DBL alpha tags supplied by the user to find the full sequenc of the var gene, by comparing the tag to the Pf3k database for near identical tag regions. It then clusters all hits and presents the largest sequence of each clusteron the Circos plot and in the summary files.
GCJMackenzie/Atholl
GCJMackenzie/datasets_class
Simulated Datasets for class use
GCJMackenzie/Disk_check
dummy workflow to check gcp config
GCJMackenzie/markdowns
GCJMackenzie/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
GCJMackenzie/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
GCJMackenzie/test-datasets
Test data to be used for automated testing with the nf-core pipelines
GCJMackenzie/test_data
test data repository to act as interim for nf-core