Pinned Repositories
adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
adam-ibs
Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM
adamcloud
Portable cloud infrastructure for a genomic transformation pipeline using Adam
avocado
A Variant Caller, Distributed. Apache 2 licensed.
docker-ubuntu-adam
(Genomics) Dockerfile for running Adam - http://bdgenomics.org
docker-ubuntu-hbase
Dockerfile for running HBase on Ubuntu
docker-ubuntu-java
Java Dockerfile for trusted automated Docker builds.
example-avro-parquet-spark
Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.
plink
(Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/
variantminer
A web UI over genomic data
GELOG's Repositories
GELOG/docker-ubuntu-hbase
Dockerfile for running HBase on Ubuntu
GELOG/docker-ubuntu-adam
(Genomics) Dockerfile for running Adam - http://bdgenomics.org
GELOG/adam-ibs
Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM
GELOG/plink
(Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/
GELOG/adamcloud
Portable cloud infrastructure for a genomic transformation pipeline using Adam
GELOG/1kg-metadata
1000 Genome Project Metadata
GELOG/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
GELOG/avocado
A Variant Caller, Distributed. Apache 2 licensed.
GELOG/docker-ubuntu-avocado
(Genomics) Dockerfile for running Avocado - http://bdgenomics.org
GELOG/docker-ubuntu-java
Java Dockerfile for trusted automated Docker builds.
GELOG/docker-ubuntu-scala
Dockerfile for running Scala on Ubuntu
GELOG/example-avro-parquet-spark
Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.
GELOG/genomic-projects
Repository for all Genomic Projects
GELOG/optithera-scripts
Various scripts developed for the Opti-Thera project at the CRCHUM
GELOG/variantminer
A web UI over genomic data
GELOG/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
GELOG/docker-ubuntu-snap
(Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/
GELOG/mononews-backend
Backend of the Mononews application: www.mononews.ca
GELOG/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
GELOG/sample-hbase-app
Sample Java application that communicates with HBase via the HBase API.