GELOG

Pinned Repositories

adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Language:Scala0 3 00
adam-ibs
Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM
Language:Scala36
adamcloud
Portable cloud infrastructure for a genomic transformation pipeline using Adam
Language:Python2 11 180
avocado
A Variant Caller, Distributed. Apache 2 licensed.
Language:Scala0 3 00
docker-ubuntu-adam
(Genomics) Dockerfile for running Adam - http://bdgenomics.org
4 10 53
docker-ubuntu-hbase
Dockerfile for running HBase on Ubuntu
7 11 85
docker-ubuntu-java
Java Dockerfile for trusted automated Docker builds.
0 8 00
example-avro-parquet-spark
Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.
Language:Scala0 10 00
plink
(Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/
Language:C++3 12 13
variantminer
A web UI over genomic data
Language:Scala0 5 171

GELOG's Repositories

GELOG/docker-ubuntu-hbase
Dockerfile for running HBase on Ubuntu
7 11 85
GELOG/docker-ubuntu-adam
(Genomics) Dockerfile for running Adam - http://bdgenomics.org
4 10 53
GELOG/adam-ibs
Ports the IBS/MDS/IBD functionality of Plink to Spark / ADAM
Language:Scala36
GELOG/plink
(Genomics) Dockerfile for running plink v1 - http://pngu.mgh.harvard.edu/~purcell/plink/
Language:C++3 12 13
GELOG/adamcloud
Portable cloud infrastructure for a genomic transformation pipeline using Adam
Language:Python2 11 180
GELOG/1kg-metadata
1000 Genome Project Metadata
Language:JavaScript0 3 70
GELOG/adam
A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Language:Scala0 3 00
GELOG/avocado
A Variant Caller, Distributed. Apache 2 licensed.
Language:Scala0 3 00
GELOG/docker-ubuntu-avocado
(Genomics) Dockerfile for running Avocado - http://bdgenomics.org
0 9 21
GELOG/docker-ubuntu-java
Java Dockerfile for trusted automated Docker builds.
0 8 00
GELOG/docker-ubuntu-scala
Dockerfile for running Scala on Ubuntu
0 9 00
GELOG/example-avro-parquet-spark
Ce projet est un exemple démontrant premièrement comment convertir un fichier Avro en classes Java. Ensuite ce projet montre comment persister des données à l'aide de Parquet. Pour terminer, ce projet démontre comment sélectionner des données depuis les fichiers Parquets à l'aide de Spark.
Language:Scala0 10 00
GELOG/genomic-projects
Repository for all Genomic Projects
Language:Ruby0 11 00
GELOG/optithera-scripts
Various scripts developed for the Opti-Thera project at the CRCHUM
Language:Java0 6 02
GELOG/variantminer
A web UI over genomic data
Language:Scala0 5 171
GELOG/bdg-formats
Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.
Language:Shell11 01
GELOG/docker-ubuntu-snap
(Genomics) Dockerfile for running Snap (Scalable Nucleotide Alignment Program) - http://snap.cs.berkeley.edu/
9 1
GELOG/mononews-backend
Backend of the Mononews application: www.mononews.ca
3 0
GELOG/plink-ng
A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).
Language:C
GELOG/sample-hbase-app
Sample Java application that communicates with HBase via the HBase API.
Language:Java5 03