Pinned Repositories
amphioxusGenome
ASTER
Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)
cactus
Official home of genome aligner based upon notion of Cactus graphs
ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文总结+润色+审稿+审稿回复
chenlianfu_tools
scripts
cnidariangenomes
Code for the Nematostella Vectensis and Scolanthus Calimorphus genome assembly and analysis
Depix
Recovers passwords from pixelized screenshots
ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
gpt4free
decentralising the Ai Industry, just some language model api's...
Lungfish_scRNA_data_analysis
Analysis code for lungfish single cell RNA-seq data
GGchange's Repositories
GGchange/SyntenyFinder
SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-level genome assemblies from NCBI.
GGchange/spatial-bonemarrow-atlas
This repository contains the code used to generate figures and perform analysis for the manuscript titled "Transcriptomic and Spatial Proteomic Profiling Reveals the Cellular Composition and Spatial Organization of the Human Bone Marrow Microenvironment"
GGchange/SKM_ageing_atlas
GGchange/cactus
Official home of genome aligner based upon notion of Cactus graphs
GGchange/single_cell_tutorial
单细胞分析的中文pipeline_python
GGchange/seurat
R toolkit for single cell genomics
GGchange/PanSyn
genome synteny pipeline
GGchange/Tail-Loss-Primates
GGchange/cnidariangenomes
Code for the Nematostella Vectensis and Scolanthus Calimorphus genome assembly and analysis
GGchange/ASTER
Accurate Species Tree EstimatoR series: a family of optimation algorithms for species tree inference implemented in C++ (including ASTRAL-Pro & Weighted ASTRAL)
GGchange/Lungfish_scRNA_data_analysis
Analysis code for lungfish single cell RNA-seq data
GGchange/NGenomeSyn
Any Way to Show Multi genomic Synteny
GGchange/amphioxusGenome
GGchange/gpt4free
decentralising the Ai Industry, just some language model api's...
GGchange/pdfGPT
PDF GPT allows you to chat with the contents of your PDF file by using GPT capabilities. The only open source solution to turn your pdf files in a chatbot!
GGchange/ChatPaper
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文总结+润色+审稿+审稿回复
GGchange/RectChr
Multi-level visualization of genomic statistical variables on rectangular chromosomes
GGchange/ForwardGenomics
Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework
GGchange/xuzhougeng_myscripts
GGchange/seqtk
Toolkit for processing sequences in FASTA/Q formats
GGchange/plotting-tree-with-data-using-ggtreeExtra
GGchange/MonotremeGenome
Custom scripts for monotreme genome project
GGchange/vPECA
vPECA is a Variants interpretation method by Paired Expression and Chromatin Accessibility data which can identify active and active selected regulatory elements and their gene regulatory network.
GGchange/Depix
Recovers passwords from pixelized screenshots
GGchange/orthologcollector
Parses a reference genome for orthologs of a protein
GGchange/QuIBL
Quantifying Introgression via Branch Lengths
GGchange/chenlianfu_tools
scripts
GGchange/OrthoFinder
Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"
GGchange/src-for-spermwhale-project
GGchange/progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules