/paper_list

List of papers on graph neural networks

List of papers on graph neural networks

GNN Lectures

  • CS224W by Jure Leskovec, [Link]
  • NeurIPS 2019 Graph Representation Learning workshop, [Link]

GNN frameworks

GNN architectures

Review papers

  • The Graph Neural Network Model, [Link]
  • Geometric deep learning: going beyond Euclidean data, [Link], [YouTube]
  • Relational inductive biases, deep learning, and graph networks, [Link]

Important papers

  • Convolutional Networks on Graphs for Learning Molecular Fingerprints, [Link], [GitHub]
  • Gated Graph Sequence Neural Networks, [Link]
  • Semi-Supervised Classification with Graph Convolutional Networks, [Link], [GitHub]
  • Neural Message Passing for Quantum Chemistry, [Link], [GitHub]
  • Graph Attention Networks, [Link], [GitHub]
  • How Powerful are Graph Neural Networks?, [Link]

Graph generative models

  • Learning Deep Generative Models of Graphs, [Link], [Github]
  • MolGAN: An implicit generative model for small molecular graphs, [Link], [GitHub]
  • Junction Tree Variational Autoencoder for Molecular Graph Generation, [Link], [GitHub]
  • Constrained Graph Variational Autoencoders for Molecule Design, [Link], [GitHub]
  • Graph Convolutional Policy Network for Goal-Directed Molecular Graph Generation, [Link], [GitHub]
  • DEFactor: Differentiable Edge Factorization-based Probabilistic Graph Generation, [Link],
  • Learning Multimodal Graph-to-Graph Translation for Molecular Optimization, [Link], [GitHub]
  • Efficient Graph Generation with Graph Recurrent Attention Networks, [Link], [GitHub]
  • Efficient learning of non-autoregressive graph variational autoencoders for molecular graph generation, [Link], [GitHub]

Pooling methods

Node/Graph classification

  • Hyperbolic Graph Convolutional Neural Networks, [Link]
  • Hyperbolic Graph Neural Networks, [Link], [GitHub]

Link prediction and recommender system

Molecular applications

  • SchNet
  • MoleculeNet
  • Bayesian GCN

Physics modeling

  • Ineraction Networks
  • Neural Relational Inference
  • Symbolic Physics
  • H-OGN
  • SRNN