Combining TSEBRA Output with other Annotations in GFF format
NicMAlexandre opened this issue · 1 comments
NicMAlexandre commented
Hello,
I am trying to wrap my head around how best to merge these annotations. We have information from EMapper and Interproscan we would like to merge with he TSEBRA output. I am pasting below an example entry for the same gene from each of the GFF files. Any help is greatly appreciated:
NicMAlexandre commented
To generate the input for the Interproscan and Emapper GFF:
agat_sp_extract_sequences.pl -g DHPbraker1+2_combined.gtf -f DHP.FINAL.chrom.fasta -p -o DHP.prot.fasta
cat DHP.prot.fasta | perl -pe 's/*//g' > DHP.prot.noStar.fasta