CHAPTER 2
Supplementary Data S2.1 Descriptive summary of relevant parameters at each step of the BioInt-U framework
Supplementary Data S2.2 Summary of key words used for the functional classification of BioInt units
Supplementary Data S2.3 Complete Simpson's similarity analysis of BioInt and CORUM complexe
Supplementary Data S2.4 Complete description of functional and topological parameters of BioInt units
Supplementary Data S2.5 Complete list of disease gene association with tissue-consistent pathologies
CHAPTER 3
Supplementary Data S3: Sheet.1 List of ALS and SMA seeds
Sheet 2 List of S2B candidates
Sheet 3 List of enriched GO terms
Sheet 4 List of enriched GO groups
Sheet 5 List of enriched diseases
Sheet 6 List of disease-gene associations
Sheet 7 Composition of cliques
Sheet 8 Composition of clusters
CHAPTER 4
Supplementary Data S4.1 Sequencing library statistics
Supplementary Data S4.2 List of RIP-Seq enriched transcripts
Supplementary Data S4.3 RNA-Seq DE transcripts
Supplementary Data S4.4 Alternative splicing analysis results
Supplementary Data S4.5 Annotation of all FlyAtlas “neuronal” genes regarding the presence in the different DE/AS/RIP data subsets
Supplementary Data S4.6 FEA of target gene-dependent transcripts
Supplementary Data S4.7 Functional Module annotation
CHAPTER 5
Supplementary Data S5.1 Drosophila TS BioInt units
Supplementary Data S4.2 Selected Human and Drosophila BioInt units