RdRp-scan_0.90.info
: List of accessions, taxonomy, viral species and putative host of RdRp-scan entriesRdRp-scan_0.90.fasta
: RdRp-scan RdRp core protein sequence database in fasta formatRdRp-scan_0.90.dmnd
: RdRp-scan RdRp core protein sequence database in diamond format (v.2.0.9)
- {viral_order}
.RdRp_motifs.fasta
: RdRp motif sequences for each viral taxa
- {viral_phyla}
.CLUSTALO_0.4.fasta
: RdRp-alignments for each individual taxa (Clustal-omega) RdRp-scan.CLUSTALO_0.4.fasta
: RdRp-alignment used to build the master RdRp tree (Clustal-omega)RdRp-scan.CLUSTALO_0.4.FAST_TREE
: RdRp FastTREE file in Newick format
RdRp_HMM_profile.db.h3?
: RdRp HMM profile database (Hmmer3-compatible ; v3.3)- {viral-taxa}
HMM_CLUSTALO.0.4.fasta
: Clustal-omega alignments (40% identity cut-off) used to build HMM profiles.
PDB_virRdRp_acc.txt
: list of viral RdRp PDB accessions
RdRp_keyword.list
: list of keyword used to retrieve RdRp-like accessions from NCBI Genbank
RdRp_InterPro_keyword.list
: list of viral RdRp-like InterProScan entries