/white-matter-matters

Brainhack Americas

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white-matter-matters

Examples of diffusion MRI analysis for vision science.

Binder

Instructions

To run these notebooks, you will need to install the IPython software, as well as dipy.

One way to install these is by using the (free) Anaconda software distribution:

  • Go to the Anaconda website and follow the instructions therein to download and install the distribution for your platform.

  • To install dipy and all the other dependencies, type:

      conda install vtk ipython pip
  pip install dipy

    At a terminal/shell window. This should download and install all of the required software dependencies to run all of the

Once you have followed these instructions, you should have all the software needed installed on your computer. To start running the notebooks, change the working directory of your terminal to the directory where you have downloaded the notebook files (using cd) and type:

ipython notebook

A browser window should open with a list of notebook files. Start by reading the index notebook and follow the instructions from there.