Pinned Repositories
apollo-1
An open autonomous driving platform
biopython
Official git repository for Biopython (originally converted from CVS)
BSA_Brassica_napus
This repository including scripts for Bulk Segregant Analysis with B.napus
DXY-COVID-19-Data
2019新型冠状病毒疫情时间序列数据仓库 | COVID-19/2019-nCoV Infection Time Series Data Warehouse
GSAT
Graph-based Sequence Assembly Toolkit
Intro-to-rnaseq-hpc-O2
This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster
mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
MITGARD
Mitochondrial Genome Assembly
Mitogenome_assemblies
Scripts used for assembly and analysis of the mitochondrial genome of the meerkat (Suricata suricatta)
MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Genesislearn's Repositories
Genesislearn/GSAT
Graph-based Sequence Assembly Toolkit
Genesislearn/MITGARD
Mitochondrial Genome Assembly
Genesislearn/Mitogenome_assemblies
Scripts used for assembly and analysis of the mitochondrial genome of the meerkat (Suricata suricatta)
Genesislearn/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Genesislearn/AnnelidaMitoGenomes
This repository contains the scripts used to conduct the analyses of annelid mitochondrial genomes. The description how the scripts have been used can be found in the paper itself.
Genesislearn/bio
Bioinformatics utilities.
Genesislearn/biofx_python
Code for Mastering Python for Bioinformatics (O'Reilly, 2021, ISBN 9781098100889)
Genesislearn/biostar-central
Biostar Q&A
Genesislearn/biostar-handbook
Issue tracker for the Biostar Handbook
Genesislearn/bsa
Bulked-Segregant Analysis using vcf file with or without parents
Genesislearn/BSATOS
Bulked segregation analysis tools for outbreeding species(BSATOS)
Genesislearn/ColabFold
Making Protein folding accessible to all!
Genesislearn/DeepBSA
DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.
Genesislearn/eKLIPse
a tool for predicting mitochondrial DNA deletions using soft-clipping
Genesislearn/EVidenceModeler
source code for EVM
Genesislearn/git-biostar
Genesislearn/git-tutorial
Genesislearn/Hello-world
Genesislearn/hifisr
HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).
Genesislearn/MEANGS
MitoDNA extending assembler from NGS data
Genesislearn/Mito-Hacker
Cellular Mitochondrial Analysis
Genesislearn/MitoCap
An R package for processing high-throughput sequence data from raw reads to alignments from mitochondrial genomes sequenced as by-catch
Genesislearn/mitocorrect
Automatically correct your mitochondrial genome annotations using expert knowledge
Genesislearn/MutMap
MutMap pipeline to identify causative mutations responsible for a phenotype
Genesislearn/OGAP
OGAP: Organelle Genome Annotation Pipeline
Genesislearn/OrthoFinder
Phylogenetic orthology inference for comparative genomics
Genesislearn/practical-statistics-for-data-scientists
Code repository for O'Reilly book
Genesislearn/recycle
Obtain the mitochondrial or chlorophyll sequence from the reads of genome sequencing, and perform assembly.
Genesislearn/sourmash
Quickly search, compare, and analyze genomic and metagenomic data sets.
Genesislearn/tiny_python_projects
Code for Tiny Python Projects (Manning, 2020, ISBN 1617297518). Learning Python through test-driven development of games and puzzles.