Genomics Aotearoa
See our GitHub pages (link below) for more information on our public repositories.
New Zealand
Pinned Repositories
environmental_metagenomics
A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
Gene_Regulatory_Networks_Simulation_Workshop
High-quality-genomes
This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.
Imputation-workshop
Kakapo
Scripts and code for Kākāpō genomic data
long-read-assembly
Long-read assembly workshop
metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
methods-and-musings
A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.
Reproducible_Bioinformatics
RNA-seq-workshop
Genomics Aotearoa's Repositories
GenomicsAotearoa/metagenomics_summer_school
Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in December
GenomicsAotearoa/RNA-seq-workshop
GenomicsAotearoa/Kakapo
Scripts and code for Kākāpō genomic data
GenomicsAotearoa/environmental_metagenomics
A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.
GenomicsAotearoa/methods-and-musings
A (growing) collection of information contributed by Genomics Aotearoa members. Semi blog post style bites of content.
GenomicsAotearoa/Imputation-workshop
GenomicsAotearoa/High-quality-genomes
This repository aims to hosting workflows/codes that have been developed for GA high-quality-genome projects.
GenomicsAotearoa/shell-for-bioinformatics
Intermediate-Advanced shell for Bioinformatics
GenomicsAotearoa/Workshop-Bash_Scripting_And_HPC_Job_Scheduler
A workshop to get you started with automating your data analysis work in a High Performance Computing environment
GenomicsAotearoa/data-management-resources
Repo supporting the manuscript 'Journeying towards best practice data management in biodiversity genomics'.
GenomicsAotearoa/hts_workshop_mpi
Training materials for the 2023 HTS Plant Health and Environment Laboratory workshop
GenomicsAotearoa/Nextflow_Workshop
A workshop to help you integrate Nextflow in your analysis workflows for reproducible and scalable pipelines.
GenomicsAotearoa/Intermediate-R
GenomicsAotearoa/Introduction-to-R
Introduction to R
GenomicsAotearoa/Pangenome-Graphs-Workshop
This repository contains material to construct pangenome graphs for a small bacteria dataset detailing every step in the Nesi environment.
GenomicsAotearoa/scRNA-seq-data-analysis
GenomicsAotearoa/AGM-workshop-2023
GenomicsAotearoa/GenomicsAotearoa.github.io
Code and files for Genomics Aotearoa github.io website
GenomicsAotearoa/IndigiDataAotearoa-IntroToShell
GenomicsAotearoa/IndigiDataAotearoa_IntroToR
Intro to R coding block for Indigidata Aotearoa
GenomicsAotearoa/Introduction-to-Bash
Introduction to the Command Line for Genomics
GenomicsAotearoa/VariomeGenomeAssembly
GenomicsAotearoa/intro-to-containers
Introduction to Software containerisation and some of the container platforms such as Apptainer , Docker
GenomicsAotearoa/introduction-to-nextflow
GenomicsAotearoa/long-read-assembly-one-day
Long-read assembly workshop modified to run in a single day
GenomicsAotearoa/long-read-microbial-isolate-genomics
Sequence processing workflow for samples obtained from microbial isolates sequenced using long-read technology.
GenomicsAotearoa/nesi-jupyter
NeSI Mahuika cluster Jupyter login details
GenomicsAotearoa/Nextflow-Developer-Workshop
Best practices for developing your pipelines with Nextflow and nf-core
GenomicsAotearoa/publicationQualityPlots_ggplot2
A short workshop that runs through building plots with ggplot2
GenomicsAotearoa/RNA-seq-workshop-on-demand
RNA-seq Data Analysis workshop, modified to run on the OnDemand training platform.